miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30686 3' -52.7 NC_006552.1 + 16779 0.66 0.870582
Target:  5'- gACAACcgaaGCCCAGGuGCUcGGCGGacacacUGCu -3'
miRNA:   3'- -UGUUGcg--UGGGUCCuUGA-CCGUU------ACG- -5'
30686 3' -52.7 NC_006552.1 + 29832 0.66 0.870582
Target:  5'- gGCuuGC-CGCCCGGGAuauccgagagACUGGCcg-GCg -3'
miRNA:   3'- -UGu-UGcGUGGGUCCU----------UGACCGuuaCG- -5'
30686 3' -52.7 NC_006552.1 + 39619 0.66 0.870582
Target:  5'- cAguACGCugaGCCgCGGGAA--GGCAAUGCc -3'
miRNA:   3'- -UguUGCG---UGG-GUCCUUgaCCGUUACG- -5'
30686 3' -52.7 NC_006552.1 + 53259 0.66 0.86324
Target:  5'- -uGGCGCGCCaggcucgcuaggucGGAGCgcaUGGCGGUGUg -3'
miRNA:   3'- ugUUGCGUGGgu------------CCUUG---ACCGUUACG- -5'
30686 3' -52.7 NC_006552.1 + 44066 0.66 0.862411
Target:  5'- gGCuGCuCGCCCAGGuuGACgGGCGGcgGCg -3'
miRNA:   3'- -UGuUGcGUGGGUCC--UUGaCCGUUa-CG- -5'
30686 3' -52.7 NC_006552.1 + 8056 0.66 0.853993
Target:  5'- gACAACcaGCA-CCGGGAcCUGGCg--GCg -3'
miRNA:   3'- -UGUUG--CGUgGGUCCUuGACCGuuaCG- -5'
30686 3' -52.7 NC_006552.1 + 57739 0.66 0.853993
Target:  5'- cGCGACGgACCCgccgAGGuACUGcGCAAacaGCa -3'
miRNA:   3'- -UGUUGCgUGGG----UCCuUGAC-CGUUa--CG- -5'
30686 3' -52.7 NC_006552.1 + 24608 0.66 0.853993
Target:  5'- uACcACGCACgcugguCCGGGucgaUGGUGAUGCg -3'
miRNA:   3'- -UGuUGCGUG------GGUCCuug-ACCGUUACG- -5'
30686 3' -52.7 NC_006552.1 + 2058 0.66 0.836445
Target:  5'- cGCGGCGaaCACCCGcacaccgcGGAGCaGGCGAaccUGCc -3'
miRNA:   3'- -UGUUGC--GUGGGU--------CCUUGaCCGUU---ACG- -5'
30686 3' -52.7 NC_006552.1 + 46404 0.67 0.827334
Target:  5'- -gAACGUGCCUGGGcgUUGGCGGUa- -3'
miRNA:   3'- ugUUGCGUGGGUCCuuGACCGUUAcg -5'
30686 3' -52.7 NC_006552.1 + 53069 0.67 0.818011
Target:  5'- ---cCGCACgguguCCAGGAACUuGGCcuUGCc -3'
miRNA:   3'- uguuGCGUG-----GGUCCUUGA-CCGuuACG- -5'
30686 3' -52.7 NC_006552.1 + 8277 0.67 0.788875
Target:  5'- ---cCGCGCCCGcgcuGGACUGGCGcaacuaccccgAUGCg -3'
miRNA:   3'- uguuGCGUGGGUc---CUUGACCGU-----------UACG- -5'
30686 3' -52.7 NC_006552.1 + 25956 0.67 0.788875
Target:  5'- gGC-AUGC-UCUGGGAACaccagGGCAAUGCg -3'
miRNA:   3'- -UGuUGCGuGGGUCCUUGa----CCGUUACG- -5'
30686 3' -52.7 NC_006552.1 + 12812 0.68 0.758225
Target:  5'- aGCAuCGCGCCUcauuGGGcGCaGGCAGUGg -3'
miRNA:   3'- -UGUuGCGUGGG----UCCuUGaCCGUUACg -5'
30686 3' -52.7 NC_006552.1 + 19817 0.69 0.726377
Target:  5'- gGCAGCGCgGCCCGGGcuCUuGCucgGCg -3'
miRNA:   3'- -UGUUGCG-UGGGUCCuuGAcCGuuaCG- -5'
30686 3' -52.7 NC_006552.1 + 31683 0.69 0.715551
Target:  5'- cGCGAacaGCGCCUugcuGGAACUGGUgc-GCa -3'
miRNA:   3'- -UGUUg--CGUGGGu---CCUUGACCGuuaCG- -5'
30686 3' -52.7 NC_006552.1 + 3604 0.69 0.715551
Target:  5'- cGCAucuACGuCGCCuacgaCAGGGACUGGgAcgGCa -3'
miRNA:   3'- -UGU---UGC-GUGG-----GUCCUUGACCgUuaCG- -5'
30686 3' -52.7 NC_006552.1 + 16679 0.69 0.693655
Target:  5'- --cGCGCGCCCAGcauccuGAACggaGGCAcacAUGCu -3'
miRNA:   3'- uguUGCGUGGGUC------CUUGa--CCGU---UACG- -5'
30686 3' -52.7 NC_006552.1 + 43172 0.7 0.638044
Target:  5'- gGCGGCGUccucgaCCAGGAcACUGGCGgccuggccaGUGCu -3'
miRNA:   3'- -UGUUGCGug----GGUCCU-UGACCGU---------UACG- -5'
30686 3' -52.7 NC_006552.1 + 56581 0.7 0.638044
Target:  5'- uCAGCGCcCaCCGGGGACUuuGCAAUGUc -3'
miRNA:   3'- uGUUGCGuG-GGUCCUUGAc-CGUUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.