miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30687 3' -54.5 NC_006552.1 + 59066 0.66 0.830818
Target:  5'- gCCAuugGCUGGUCaGGGU--UGCGCCGauUCCa -3'
miRNA:   3'- -GGU---UGACUAG-CUCGucACGCGGU--GGG- -5'
30687 3' -54.5 NC_006552.1 + 12423 0.66 0.830818
Target:  5'- cCCcACccc-CGAGCAGauCGCCGCCCa -3'
miRNA:   3'- -GGuUGacuaGCUCGUCacGCGGUGGG- -5'
30687 3' -54.5 NC_006552.1 + 31433 0.66 0.821834
Target:  5'- gCAuuGCUG-UUGAGCAGaaCGCCGgCCg -3'
miRNA:   3'- gGU--UGACuAGCUCGUCacGCGGUgGG- -5'
30687 3' -54.5 NC_006552.1 + 51139 0.66 0.821834
Target:  5'- -gAACUcAUCG-GCGGUugGCGCC-CCCu -3'
miRNA:   3'- ggUUGAcUAGCuCGUCA--CGCGGuGGG- -5'
30687 3' -54.5 NC_006552.1 + 6716 0.66 0.821834
Target:  5'- aCGcACUG-UCGAGCGcUGUGCUucuCCCg -3'
miRNA:   3'- gGU-UGACuAGCUCGUcACGCGGu--GGG- -5'
30687 3' -54.5 NC_006552.1 + 29122 0.66 0.793752
Target:  5'- cCCugUUGGUCGccaccagccgaAGCGccgGCGUCACCCg -3'
miRNA:   3'- -GGuuGACUAGC-----------UCGUca-CGCGGUGGG- -5'
30687 3' -54.5 NC_006552.1 + 52810 0.66 0.784048
Target:  5'- aCGGcCUGcgCGucGGCGGUGuCGCCugUCa -3'
miRNA:   3'- gGUU-GACuaGC--UCGUCAC-GCGGugGG- -5'
30687 3' -54.5 NC_006552.1 + 1074 0.66 0.784048
Target:  5'- aCCGcaaGCUGugccugauUCGcaacGCAGcucGCGCCGCCCu -3'
miRNA:   3'- -GGU---UGACu-------AGCu---CGUCa--CGCGGUGGG- -5'
30687 3' -54.5 NC_006552.1 + 34753 0.67 0.740704
Target:  5'- gCAGUUGAUCGAGUAGUaccggcuaacuccuGCGaUCGCCUg -3'
miRNA:   3'- gGUUGACUAGCUCGUCA--------------CGC-GGUGGG- -5'
30687 3' -54.5 NC_006552.1 + 24607 0.67 0.733438
Target:  5'- aCCAcgcacGCUGGUcCGGGUcgauGGUgauGCGCuCGCCCa -3'
miRNA:   3'- -GGU-----UGACUA-GCUCG----UCA---CGCG-GUGGG- -5'
30687 3' -54.5 NC_006552.1 + 45268 0.67 0.732396
Target:  5'- gCCAACcccugaaUGGUCGAagcGUAG-GCGCgGCCUg -3'
miRNA:   3'- -GGUUG-------ACUAGCU---CGUCaCGCGgUGGG- -5'
30687 3' -54.5 NC_006552.1 + 61960 0.68 0.722974
Target:  5'- cUCGGCUGGaaggaUCGccGCAGUGCGCCGg-- -3'
miRNA:   3'- -GGUUGACU-----AGCu-CGUCACGCGGUggg -5'
30687 3' -54.5 NC_006552.1 + 33510 0.68 0.722974
Target:  5'- gUCGGCcgaGAUCu-GCAGgcGCGCCACCUg -3'
miRNA:   3'- -GGUUGa--CUAGcuCGUCa-CGCGGUGGG- -5'
30687 3' -54.5 NC_006552.1 + 52197 0.68 0.712422
Target:  5'- gUAGCUGcUCGGGCcGUaGCuGCgGCCCa -3'
miRNA:   3'- gGUUGACuAGCUCGuCA-CG-CGgUGGG- -5'
30687 3' -54.5 NC_006552.1 + 48848 0.68 0.701793
Target:  5'- gCCGGCUGAcCGccauGCAGaacCGCCGCCg -3'
miRNA:   3'- -GGUUGACUaGCu---CGUCac-GCGGUGGg -5'
30687 3' -54.5 NC_006552.1 + 44515 0.68 0.701793
Target:  5'- gCCuGCUcGAUgGgcgccGGCAGUccuGUGCCGCCCg -3'
miRNA:   3'- -GGuUGA-CUAgC-----UCGUCA---CGCGGUGGG- -5'
30687 3' -54.5 NC_006552.1 + 60443 0.68 0.700726
Target:  5'- aCCAGCU--UCG-GCGGUgccggcuGCGUCACCUg -3'
miRNA:   3'- -GGUUGAcuAGCuCGUCA-------CGCGGUGGG- -5'
30687 3' -54.5 NC_006552.1 + 32925 0.69 0.658722
Target:  5'- gCAACUGGUagacGGCAGUuccgGCGaCCACCUc -3'
miRNA:   3'- gGUUGACUAgc--UCGUCA----CGC-GGUGGG- -5'
30687 3' -54.5 NC_006552.1 + 46576 0.69 0.637
Target:  5'- aCCAGCcgcuuugGGUCGAGCAGggccCGUUACCg -3'
miRNA:   3'- -GGUUGa------CUAGCUCGUCac--GCGGUGGg -5'
30687 3' -54.5 NC_006552.1 + 20642 0.69 0.626128
Target:  5'- aCCAcCUGA-CGGGCA--GCGCCugCUg -3'
miRNA:   3'- -GGUuGACUaGCUCGUcaCGCGGugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.