Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30687 | 3' | -54.5 | NC_006552.1 | + | 61960 | 0.68 | 0.722974 |
Target: 5'- cUCGGCUGGaaggaUCGccGCAGUGCGCCGg-- -3' miRNA: 3'- -GGUUGACU-----AGCu-CGUCACGCGGUggg -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 60443 | 0.68 | 0.700726 |
Target: 5'- aCCAGCU--UCG-GCGGUgccggcuGCGUCACCUg -3' miRNA: 3'- -GGUUGAcuAGCuCGUCA-------CGCGGUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 60089 | 0.7 | 0.561315 |
Target: 5'- cCCAACUcg-CGGGCGGUcauuGCGgCACCUg -3' miRNA: 3'- -GGUUGAcuaGCUCGUCA----CGCgGUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 59066 | 0.66 | 0.830818 |
Target: 5'- gCCAuugGCUGGUCaGGGU--UGCGCCGauUCCa -3' miRNA: 3'- -GGU---UGACUAG-CUCGucACGCGGU--GGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 57873 | 0.73 | 0.39259 |
Target: 5'- uCgAACUGAUagGAGCGcUGCGCCAUCUg -3' miRNA: 3'- -GgUUGACUAg-CUCGUcACGCGGUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 57055 | 0.71 | 0.498465 |
Target: 5'- gCCAGgUGGUCGcGCAGUauCGCgGCCCc -3' miRNA: 3'- -GGUUgACUAGCuCGUCAc-GCGgUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 52810 | 0.66 | 0.784048 |
Target: 5'- aCGGcCUGcgCGucGGCGGUGuCGCCugUCa -3' miRNA: 3'- gGUU-GACuaGC--UCGUCAC-GCGGugGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 52197 | 0.68 | 0.712422 |
Target: 5'- gUAGCUGcUCGGGCcGUaGCuGCgGCCCa -3' miRNA: 3'- gGUUGACuAGCUCGuCA-CG-CGgUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 51139 | 0.66 | 0.821834 |
Target: 5'- -gAACUcAUCG-GCGGUugGCGCC-CCCu -3' miRNA: 3'- ggUUGAcUAGCuCGUCA--CGCGGuGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 49717 | 0.71 | 0.550661 |
Target: 5'- aCAGCcGGUUGuGCGGcuUGCGCCugCUg -3' miRNA: 3'- gGUUGaCUAGCuCGUC--ACGCGGugGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 49646 | 0.7 | 0.604409 |
Target: 5'- gCCGAUUGGcgUCgGGGCuugcuGcUGCGCCGCCUg -3' miRNA: 3'- -GGUUGACU--AG-CUCGu----C-ACGCGGUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 49190 | 0.74 | 0.35787 |
Target: 5'- aCCAACUGGUC-AGU--UGCGCCACUg -3' miRNA: 3'- -GGUUGACUAGcUCGucACGCGGUGGg -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 48848 | 0.68 | 0.701793 |
Target: 5'- gCCGGCUGAcCGccauGCAGaacCGCCGCCg -3' miRNA: 3'- -GGUUGACUaGCu---CGUCac-GCGGUGGg -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 46576 | 0.69 | 0.637 |
Target: 5'- aCCAGCcgcuuugGGUCGAGCAGggccCGUUACCg -3' miRNA: 3'- -GGUUGa------CUAGCUCGUCac--GCGGUGGg -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 45268 | 0.67 | 0.732396 |
Target: 5'- gCCAACcccugaaUGGUCGAagcGUAG-GCGCgGCCUg -3' miRNA: 3'- -GGUUG-------ACUAGCU---CGUCaCGCGgUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 44515 | 0.68 | 0.701793 |
Target: 5'- gCCuGCUcGAUgGgcgccGGCAGUccuGUGCCGCCCg -3' miRNA: 3'- -GGuUGA-CUAgC-----UCGUCA---CGCGGUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 39726 | 0.7 | 0.593579 |
Target: 5'- cCCAGCgcgauGUUGAGgAuGUGCGCCagGCCCu -3' miRNA: 3'- -GGUUGac---UAGCUCgU-CACGCGG--UGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 34753 | 0.67 | 0.740704 |
Target: 5'- gCAGUUGAUCGAGUAGUaccggcuaacuccuGCGaUCGCCUg -3' miRNA: 3'- gGUUGACUAGCUCGUCA--------------CGC-GGUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 33510 | 0.68 | 0.722974 |
Target: 5'- gUCGGCcgaGAUCu-GCAGgcGCGCCACCUg -3' miRNA: 3'- -GGUUGa--CUAGcuCGUCa-CGCGGUGGG- -5' |
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30687 | 3' | -54.5 | NC_006552.1 | + | 32925 | 0.69 | 0.658722 |
Target: 5'- gCAACUGGUagacGGCAGUuccgGCGaCCACCUc -3' miRNA: 3'- gGUUGACUAgc--UCGUCA----CGC-GGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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