miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30687 3' -54.5 NC_006552.1 + 57055 0.71 0.498465
Target:  5'- gCCAGgUGGUCGcGCAGUauCGCgGCCCc -3'
miRNA:   3'- -GGUUgACUAGCuCGUCAc-GCGgUGGG- -5'
30687 3' -54.5 NC_006552.1 + 29212 0.71 0.540069
Target:  5'- aCCAGCUucUCGuAGCcgauGGUGUGCUugCCg -3'
miRNA:   3'- -GGUUGAcuAGC-UCG----UCACGCGGugGG- -5'
30687 3' -54.5 NC_006552.1 + 49717 0.71 0.550661
Target:  5'- aCAGCcGGUUGuGCGGcuUGCGCCugCUg -3'
miRNA:   3'- gGUUGaCUAGCuCGUC--ACGCGGugGG- -5'
30687 3' -54.5 NC_006552.1 + 60089 0.7 0.561315
Target:  5'- cCCAACUcg-CGGGCGGUcauuGCGgCACCUg -3'
miRNA:   3'- -GGUUGAcuaGCUCGUCA----CGCgGUGGG- -5'
30687 3' -54.5 NC_006552.1 + 39726 0.7 0.593579
Target:  5'- cCCAGCgcgauGUUGAGgAuGUGCGCCagGCCCu -3'
miRNA:   3'- -GGUUGac---UAGCUCgU-CACGCGG--UGGG- -5'
30687 3' -54.5 NC_006552.1 + 49646 0.7 0.604409
Target:  5'- gCCGAUUGGcgUCgGGGCuugcuGcUGCGCCGCCUg -3'
miRNA:   3'- -GGUUGACU--AG-CUCGu----C-ACGCGGUGGG- -5'
30687 3' -54.5 NC_006552.1 + 21041 0.69 0.622867
Target:  5'- gUAGCUGAUCGAugguuugaagaaccGCGGcGCGCCGacggUCCa -3'
miRNA:   3'- gGUUGACUAGCU--------------CGUCaCGCGGU----GGG- -5'
30687 3' -54.5 NC_006552.1 + 20642 0.69 0.626128
Target:  5'- aCCAcCUGA-CGGGCA--GCGCCugCUg -3'
miRNA:   3'- -GGUuGACUaGCUCGUcaCGCGGugGG- -5'
30687 3' -54.5 NC_006552.1 + 46576 0.69 0.637
Target:  5'- aCCAGCcgcuuugGGUCGAGCAGggccCGUUACCg -3'
miRNA:   3'- -GGUUGa------CUAGCUCGUCac--GCGGUGGg -5'
30687 3' -54.5 NC_006552.1 + 32925 0.69 0.658722
Target:  5'- gCAACUGGUagacGGCAGUuccgGCGaCCACCUc -3'
miRNA:   3'- gGUUGACUAgc--UCGUCA----CGC-GGUGGG- -5'
30687 3' -54.5 NC_006552.1 + 12423 0.66 0.830818
Target:  5'- cCCcACccc-CGAGCAGauCGCCGCCCa -3'
miRNA:   3'- -GGuUGacuaGCUCGUCacGCGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.