miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30687 3' -54.5 NC_006552.1 + 49646 0.7 0.604409
Target:  5'- gCCGAUUGGcgUCgGGGCuugcuGcUGCGCCGCCUg -3'
miRNA:   3'- -GGUUGACU--AG-CUCGu----C-ACGCGGUGGG- -5'
30687 3' -54.5 NC_006552.1 + 49717 0.71 0.550661
Target:  5'- aCAGCcGGUUGuGCGGcuUGCGCCugCUg -3'
miRNA:   3'- gGUUGaCUAGCuCGUC--ACGCGGugGG- -5'
30687 3' -54.5 NC_006552.1 + 51139 0.66 0.821834
Target:  5'- -gAACUcAUCG-GCGGUugGCGCC-CCCu -3'
miRNA:   3'- ggUUGAcUAGCuCGUCA--CGCGGuGGG- -5'
30687 3' -54.5 NC_006552.1 + 52197 0.68 0.712422
Target:  5'- gUAGCUGcUCGGGCcGUaGCuGCgGCCCa -3'
miRNA:   3'- gGUUGACuAGCUCGuCA-CG-CGgUGGG- -5'
30687 3' -54.5 NC_006552.1 + 52810 0.66 0.784048
Target:  5'- aCGGcCUGcgCGucGGCGGUGuCGCCugUCa -3'
miRNA:   3'- gGUU-GACuaGC--UCGUCAC-GCGGugGG- -5'
30687 3' -54.5 NC_006552.1 + 57055 0.71 0.498465
Target:  5'- gCCAGgUGGUCGcGCAGUauCGCgGCCCc -3'
miRNA:   3'- -GGUUgACUAGCuCGUCAc-GCGgUGGG- -5'
30687 3' -54.5 NC_006552.1 + 57873 0.73 0.39259
Target:  5'- uCgAACUGAUagGAGCGcUGCGCCAUCUg -3'
miRNA:   3'- -GgUUGACUAg-CUCGUcACGCGGUGGG- -5'
30687 3' -54.5 NC_006552.1 + 59066 0.66 0.830818
Target:  5'- gCCAuugGCUGGUCaGGGU--UGCGCCGauUCCa -3'
miRNA:   3'- -GGU---UGACUAG-CUCGucACGCGGU--GGG- -5'
30687 3' -54.5 NC_006552.1 + 60089 0.7 0.561315
Target:  5'- cCCAACUcg-CGGGCGGUcauuGCGgCACCUg -3'
miRNA:   3'- -GGUUGAcuaGCUCGUCA----CGCgGUGGG- -5'
30687 3' -54.5 NC_006552.1 + 60443 0.68 0.700726
Target:  5'- aCCAGCU--UCG-GCGGUgccggcuGCGUCACCUg -3'
miRNA:   3'- -GGUUGAcuAGCuCGUCA-------CGCGGUGGG- -5'
30687 3' -54.5 NC_006552.1 + 61960 0.68 0.722974
Target:  5'- cUCGGCUGGaaggaUCGccGCAGUGCGCCGg-- -3'
miRNA:   3'- -GGUUGACU-----AGCu-CGUCACGCGGUggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.