Results 61 - 72 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 32422 | 0.66 | 0.753408 |
Target: 5'- -cGGGCAcgcuacGCAcCUGCCcuugggugaACAUCAGCCCg -3' miRNA: 3'- aaCCUGU------UGUaGGUGG---------UGUGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 53366 | 0.66 | 0.753408 |
Target: 5'- -cGGACAGaagauUCUGCUugGcCCAGUCCg -3' miRNA: 3'- aaCCUGUUgu---AGGUGGugU-GGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 24840 | 0.66 | 0.732413 |
Target: 5'- cUGGugGaaccagauggcGCAgCCAUCGCugCGGCCg -3' miRNA: 3'- aACCugU-----------UGUaGGUGGUGugGUCGGg -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 49664 | 0.66 | 0.732413 |
Target: 5'- cUGGAUGuCGUCCugCACGCCgauuggcgucggGGCUUg -3' miRNA: 3'- aACCUGUuGUAGGugGUGUGG------------UCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 34608 | 0.66 | 0.742967 |
Target: 5'- aUUGGuaGCAGCGUCgCACUAUcaucgguacucgGCCAGCUa -3' miRNA: 3'- -AACC--UGUUGUAG-GUGGUG------------UGGUCGGg -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 13736 | 0.66 | 0.742967 |
Target: 5'- -aGGAauuGACcacaCugCGCACCAGCCUg -3' miRNA: 3'- aaCCUg--UUGuag-GugGUGUGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 3511 | 0.66 | 0.742967 |
Target: 5'- -cGGACcuGGCcgCUcgACCACGCCGGCauCCu -3' miRNA: 3'- aaCCUG--UUGuaGG--UGGUGUGGUCG--GG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 557 | 0.66 | 0.742967 |
Target: 5'- -cGGcCGACgcuGUUCGCCGCGCC-GCCg -3' miRNA: 3'- aaCCuGUUG---UAGGUGGUGUGGuCGGg -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 522 | 0.66 | 0.742967 |
Target: 5'- -cGcGACAGagUAUgUGCCgaGCACCGGCCCa -3' miRNA: 3'- aaC-CUGUU--GUAgGUGG--UGUGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 11180 | 0.66 | 0.747158 |
Target: 5'- cUGGccGCgAGCcgCCACCGCggccgaccacucaccACCAGCCg -3' miRNA: 3'- aACC--UG-UUGuaGGUGGUG---------------UGGUCGGg -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 65188 | 0.66 | 0.753408 |
Target: 5'- -gGGGCAGCcugcUCCaACCGaucaagauaAUCAGCCCa -3' miRNA: 3'- aaCCUGUUGu---AGG-UGGUg--------UGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 8713 | 0.66 | 0.773904 |
Target: 5'- -aGGGCGGCGUCCaguGCCuguuCACCGaguacugacgauGCCUc -3' miRNA: 3'- aaCCUGUUGUAGG---UGGu---GUGGU------------CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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