miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30687 5' -54.7 NC_006552.1 + 20113 0.67 0.709933
Target:  5'- -cGGGCGAUugGUCaACCACAUCgugugguAGCCCu -3'
miRNA:   3'- aaCCUGUUG--UAGgUGGUGUGG-------UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 8062 0.67 0.721758
Target:  5'- cUGGACGACAaCCA--GCACCGGgaCCu -3'
miRNA:   3'- aACCUGUUGUaGGUggUGUGGUCg-GG- -5'
30687 5' -54.7 NC_006552.1 + 43299 0.67 0.711012
Target:  5'- aUGGAUgcccCGUCCACCagcaGCGCCugcacGGCCUg -3'
miRNA:   3'- aACCUGuu--GUAGGUGG----UGUGG-----UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 36889 0.67 0.711012
Target:  5'- gUGGAuCGACAgagCCGCCAgGCCcauGUUCa -3'
miRNA:   3'- aACCU-GUUGUa--GGUGGUgUGGu--CGGG- -5'
30687 5' -54.7 NC_006552.1 + 15353 0.67 0.700188
Target:  5'- --cGACGACAUgCGCC--ACCGGCUCg -3'
miRNA:   3'- aacCUGUUGUAgGUGGugUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 18099 0.67 0.700188
Target:  5'- ---cGCuccCAcCCGCCugGCCAGCCCc -3'
miRNA:   3'- aaccUGuu-GUaGGUGGugUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 60159 0.67 0.693661
Target:  5'- cUGGuACAggugccgauagguaaGCGUgcuggCCACCAgGCCAGCCa -3'
miRNA:   3'- aACC-UGU---------------UGUA-----GGUGGUgUGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 38187 0.67 0.689298
Target:  5'- aUUGGGCAcgcccACAUCCACUGaauCCAaCCCu -3'
miRNA:   3'- -AACCUGU-----UGUAGGUGGUgu-GGUcGGG- -5'
30687 5' -54.7 NC_006552.1 + 19456 0.67 0.678351
Target:  5'- --cGACAG-AUCgAUCACACCGGCCg -3'
miRNA:   3'- aacCUGUUgUAGgUGGUGUGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 6784 0.67 0.678351
Target:  5'- -aGGGCAGCAaCCGCgAgUGCCAGgCCu -3'
miRNA:   3'- aaCCUGUUGUaGGUGgU-GUGGUCgGG- -5'
30687 5' -54.7 NC_006552.1 + 32733 0.67 0.678351
Target:  5'- -cGGcCAGCGUCaUACCGCGCCA-CCg -3'
miRNA:   3'- aaCCuGUUGUAG-GUGGUGUGGUcGGg -5'
30687 5' -54.7 NC_006552.1 + 8713 0.66 0.773904
Target:  5'- -aGGGCGGCGUCCaguGCCuguuCACCGaguacugacgauGCCUc -3'
miRNA:   3'- aaCCUGUUGUAGG---UGGu---GUGGU------------CGGG- -5'
30687 5' -54.7 NC_006552.1 + 29617 0.66 0.773904
Target:  5'- -cGGACGGga--CGCCAC-CCAGUCCc -3'
miRNA:   3'- aaCCUGUUguagGUGGUGuGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 52966 0.66 0.773904
Target:  5'- -cGGGCGGcCAUCCGCgCACGgC-GCUCg -3'
miRNA:   3'- aaCCUGUU-GUAGGUG-GUGUgGuCGGG- -5'
30687 5' -54.7 NC_006552.1 + 27154 0.66 0.763725
Target:  5'- -cGGAUGGCcUCCACCACGUCGcGCUUg -3'
miRNA:   3'- aaCCUGUUGuAGGUGGUGUGGU-CGGG- -5'
30687 5' -54.7 NC_006552.1 + 53932 0.66 0.763725
Target:  5'- -cGGAUcGCGUCgGCCAauaUGGCCCa -3'
miRNA:   3'- aaCCUGuUGUAGgUGGUgugGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 14564 0.66 0.763725
Target:  5'- -aGGACAugACGUCCAUCAa--CGGCUUg -3'
miRNA:   3'- aaCCUGU--UGUAGGUGGUgugGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 24184 0.66 0.763725
Target:  5'- gUGGGCGAacagcaguuCAUCCGCguugGCugCGGCCg -3'
miRNA:   3'- aACCUGUU---------GUAGGUGg---UGugGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 10242 0.66 0.75755
Target:  5'- cUGGACGACGcugguaaggauUCCgacgaguucgcacagGCCgACGCCAGCUUc -3'
miRNA:   3'- aACCUGUUGU-----------AGG---------------UGG-UGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 1239 0.66 0.754446
Target:  5'- -cGGACAGCAaucugguggcgcgcgCCACCAacUACCuGGCCg -3'
miRNA:   3'- aaCCUGUUGUa--------------GGUGGU--GUGG-UCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.