miRNA display CGI


Results 41 - 60 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30687 5' -54.7 NC_006552.1 + 32733 0.67 0.678351
Target:  5'- -cGGcCAGCGUCaUACCGCGCCA-CCg -3'
miRNA:   3'- aaCCuGUUGUAG-GUGGUGUGGUcGGg -5'
30687 5' -54.7 NC_006552.1 + 6784 0.67 0.678351
Target:  5'- -aGGGCAGCAaCCGCgAgUGCCAGgCCu -3'
miRNA:   3'- aaCCUGUUGUaGGUGgU-GUGGUCgGG- -5'
30687 5' -54.7 NC_006552.1 + 19456 0.67 0.678351
Target:  5'- --cGACAG-AUCgAUCACACCGGCCg -3'
miRNA:   3'- aacCUGUUgUAGgUGGUGUGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 38187 0.67 0.689298
Target:  5'- aUUGGGCAcgcccACAUCCACUGaauCCAaCCCu -3'
miRNA:   3'- -AACCUGU-----UGUAGGUGGUgu-GGUcGGG- -5'
30687 5' -54.7 NC_006552.1 + 60159 0.67 0.693661
Target:  5'- cUGGuACAggugccgauagguaaGCGUgcuggCCACCAgGCCAGCCa -3'
miRNA:   3'- aACC-UGU---------------UGUA-----GGUGGUgUGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 15353 0.67 0.700188
Target:  5'- --cGACGACAUgCGCC--ACCGGCUCg -3'
miRNA:   3'- aacCUGUUGUAgGUGGugUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 18099 0.67 0.700188
Target:  5'- ---cGCuccCAcCCGCCugGCCAGCCCc -3'
miRNA:   3'- aaccUGuu-GUaGGUGGugUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 20113 0.67 0.709933
Target:  5'- -cGGGCGAUugGUCaACCACAUCgugugguAGCCCu -3'
miRNA:   3'- aaCCUGUUG--UAGgUGGUGUGG-------UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 36889 0.67 0.711012
Target:  5'- gUGGAuCGACAgagCCGCCAgGCCcauGUUCa -3'
miRNA:   3'- aACCU-GUUGUa--GGUGGUgUGGu--CGGG- -5'
30687 5' -54.7 NC_006552.1 + 43299 0.67 0.711012
Target:  5'- aUGGAUgcccCGUCCACCagcaGCGCCugcacGGCCUg -3'
miRNA:   3'- aACCUGuu--GUAGGUGG----UGUGG-----UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 8062 0.67 0.721758
Target:  5'- cUGGACGACAaCCA--GCACCGGgaCCu -3'
miRNA:   3'- aACCUGUUGUaGGUggUGUGGUCg-GG- -5'
30687 5' -54.7 NC_006552.1 + 24840 0.66 0.732413
Target:  5'- cUGGugGaaccagauggcGCAgCCAUCGCugCGGCCg -3'
miRNA:   3'- aACCugU-----------UGUaGGUGGUGugGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 49664 0.66 0.732413
Target:  5'- cUGGAUGuCGUCCugCACGCCgauuggcgucggGGCUUg -3'
miRNA:   3'- aACCUGUuGUAGGugGUGUGG------------UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 522 0.66 0.742967
Target:  5'- -cGcGACAGagUAUgUGCCgaGCACCGGCCCa -3'
miRNA:   3'- aaC-CUGUU--GUAgGUGG--UGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 557 0.66 0.742967
Target:  5'- -cGGcCGACgcuGUUCGCCGCGCC-GCCg -3'
miRNA:   3'- aaCCuGUUG---UAGGUGGUGUGGuCGGg -5'
30687 5' -54.7 NC_006552.1 + 3511 0.66 0.742967
Target:  5'- -cGGACcuGGCcgCUcgACCACGCCGGCauCCu -3'
miRNA:   3'- aaCCUG--UUGuaGG--UGGUGUGGUCG--GG- -5'
30687 5' -54.7 NC_006552.1 + 13736 0.66 0.742967
Target:  5'- -aGGAauuGACcacaCugCGCACCAGCCUg -3'
miRNA:   3'- aaCCUg--UUGuag-GugGUGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 34608 0.66 0.742967
Target:  5'- aUUGGuaGCAGCGUCgCACUAUcaucgguacucgGCCAGCUa -3'
miRNA:   3'- -AACC--UGUUGUAG-GUGGUG------------UGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 11180 0.66 0.747158
Target:  5'- cUGGccGCgAGCcgCCACCGCggccgaccacucaccACCAGCCg -3'
miRNA:   3'- aACC--UG-UUGuaGGUGGUG---------------UGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 53366 0.66 0.753408
Target:  5'- -cGGACAGaagauUCUGCUugGcCCAGUCCg -3'
miRNA:   3'- aaCCUGUUgu---AGGUGGugU-GGUCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.