Results 21 - 40 of 72 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 53211 | 0.7 | 0.535737 |
Target: 5'- -aGGugGAguaGUCCACCGucucggcgucCACCGGCUCg -3' miRNA: 3'- aaCCugUUg--UAGGUGGU----------GUGGUCGGG- -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 60461 | 0.7 | 0.546484 |
Target: 5'- -cGaGGCGGCGUCUcCUGCACCAGCUUc -3' miRNA: 3'- aaC-CUGUUGUAGGuGGUGUGGUCGGG- -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 48850 | 0.7 | 0.546484 |
Target: 5'- -cGGcCGGCugaCCGCCAugcagaaccgcCGCCGGCCCg -3' miRNA: 3'- aaCCuGUUGua-GGUGGU-----------GUGGUCGGG- -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 34780 | 0.69 | 0.5573 |
Target: 5'- gUGGAaGAUAaUCGCCAgGCgCAGCCCg -3' miRNA: 3'- aACCUgUUGUaGGUGGUgUG-GUCGGG- -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 8924 | 0.69 | 0.5573 |
Target: 5'- -aGGcCGGCGUCCGCCAguuCGCCAuccagcagcGCCUg -3' miRNA: 3'- aaCCuGUUGUAGGUGGU---GUGGU---------CGGG- -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 55284 | 0.69 | 0.568175 |
Target: 5'- cUGGAUAGCAUCggucagCGCCuuGCCGGUCUu -3' miRNA: 3'- aACCUGUUGUAG------GUGGugUGGUCGGG- -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 12990 | 0.69 | 0.579104 |
Target: 5'- -aGGACuugcucguCGUCgACCA-GCCGGCCCu -3' miRNA: 3'- aaCCUGuu------GUAGgUGGUgUGGUCGGG- -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 61760 | 0.69 | 0.601084 |
Target: 5'- -gGGGCAcacCAUguucCCGCCuacgaacucgcACGCCGGCCCa -3' miRNA: 3'- aaCCUGUu--GUA----GGUGG-----------UGUGGUCGGG- -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 38973 | 0.69 | 0.601084 |
Target: 5'- aUGGGCGACAgguggCgaaACUGCGCCggucGGCCCa -3' miRNA: 3'- aACCUGUUGUa----Gg--UGGUGUGG----UCGGG- -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 14698 | 0.68 | 0.612119 |
Target: 5'- -cGGaACAACcagCCACgGCGCCGGCagCCg -3' miRNA: 3'- aaCC-UGUUGua-GGUGgUGUGGUCG--GG- -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 4928 | 0.68 | 0.612119 |
Target: 5'- -cGGGCuuuc-CCGCCGCGCCA-CCCg -3' miRNA: 3'- aaCCUGuuguaGGUGGUGUGGUcGGG- -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 57943 | 0.68 | 0.623172 |
Target: 5'- cUGGugGACcUCCugCggggACACCAcCCCa -3' miRNA: 3'- aACCugUUGuAGGugG----UGUGGUcGGG- -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 25285 | 0.68 | 0.633126 |
Target: 5'- cUGGACAGCA-CC-CCAguucuuuCGCCugcGCCCa -3' miRNA: 3'- aACCUGUUGUaGGuGGU-------GUGGu--CGGG- -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 33150 | 0.68 | 0.633126 |
Target: 5'- -gGGGCGuGCGguagcccUCCACgCGCagaauGCCAGCCCg -3' miRNA: 3'- aaCCUGU-UGU-------AGGUG-GUG-----UGGUCGGG- -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 13526 | 0.68 | 0.634232 |
Target: 5'- -aGGuCGACG-CCAUCAaagggauGCCGGCCCa -3' miRNA: 3'- aaCCuGUUGUaGGUGGUg------UGGUCGGG- -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 3640 | 0.68 | 0.645291 |
Target: 5'- -cGGACGcaaGCAcucgCCACCGCcCCAGCg- -3' miRNA: 3'- aaCCUGU---UGUa---GGUGGUGuGGUCGgg -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 55679 | 0.68 | 0.656337 |
Target: 5'- cUGcGCAGCAggUCACCcacGCGCCGGCCa -3' miRNA: 3'- aACcUGUUGUa-GGUGG---UGUGGUCGGg -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 11986 | 0.68 | 0.656337 |
Target: 5'- --uGACcGCgAUCCACgGCAUCAGCCa -3' miRNA: 3'- aacCUGuUG-UAGGUGgUGUGGUCGGg -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 59443 | 0.68 | 0.656337 |
Target: 5'- --uGACGGCGaCCAgCACGCCgaucAGCCCc -3' miRNA: 3'- aacCUGUUGUaGGUgGUGUGG----UCGGG- -5' |
|||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 6842 | 0.68 | 0.667361 |
Target: 5'- -gGGGCAgu-UUCGCCgugGCCAGCCCa -3' miRNA: 3'- aaCCUGUuguAGGUGGug-UGGUCGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home