miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30687 5' -54.7 NC_006552.1 + 53211 0.7 0.535737
Target:  5'- -aGGugGAguaGUCCACCGucucggcgucCACCGGCUCg -3'
miRNA:   3'- aaCCugUUg--UAGGUGGU----------GUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 60461 0.7 0.546484
Target:  5'- -cGaGGCGGCGUCUcCUGCACCAGCUUc -3'
miRNA:   3'- aaC-CUGUUGUAGGuGGUGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 48850 0.7 0.546484
Target:  5'- -cGGcCGGCugaCCGCCAugcagaaccgcCGCCGGCCCg -3'
miRNA:   3'- aaCCuGUUGua-GGUGGU-----------GUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 34780 0.69 0.5573
Target:  5'- gUGGAaGAUAaUCGCCAgGCgCAGCCCg -3'
miRNA:   3'- aACCUgUUGUaGGUGGUgUG-GUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 8924 0.69 0.5573
Target:  5'- -aGGcCGGCGUCCGCCAguuCGCCAuccagcagcGCCUg -3'
miRNA:   3'- aaCCuGUUGUAGGUGGU---GUGGU---------CGGG- -5'
30687 5' -54.7 NC_006552.1 + 55284 0.69 0.568175
Target:  5'- cUGGAUAGCAUCggucagCGCCuuGCCGGUCUu -3'
miRNA:   3'- aACCUGUUGUAG------GUGGugUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 12990 0.69 0.579104
Target:  5'- -aGGACuugcucguCGUCgACCA-GCCGGCCCu -3'
miRNA:   3'- aaCCUGuu------GUAGgUGGUgUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 61760 0.69 0.601084
Target:  5'- -gGGGCAcacCAUguucCCGCCuacgaacucgcACGCCGGCCCa -3'
miRNA:   3'- aaCCUGUu--GUA----GGUGG-----------UGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 38973 0.69 0.601084
Target:  5'- aUGGGCGACAgguggCgaaACUGCGCCggucGGCCCa -3'
miRNA:   3'- aACCUGUUGUa----Gg--UGGUGUGG----UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 14698 0.68 0.612119
Target:  5'- -cGGaACAACcagCCACgGCGCCGGCagCCg -3'
miRNA:   3'- aaCC-UGUUGua-GGUGgUGUGGUCG--GG- -5'
30687 5' -54.7 NC_006552.1 + 4928 0.68 0.612119
Target:  5'- -cGGGCuuuc-CCGCCGCGCCA-CCCg -3'
miRNA:   3'- aaCCUGuuguaGGUGGUGUGGUcGGG- -5'
30687 5' -54.7 NC_006552.1 + 57943 0.68 0.623172
Target:  5'- cUGGugGACcUCCugCggggACACCAcCCCa -3'
miRNA:   3'- aACCugUUGuAGGugG----UGUGGUcGGG- -5'
30687 5' -54.7 NC_006552.1 + 25285 0.68 0.633126
Target:  5'- cUGGACAGCA-CC-CCAguucuuuCGCCugcGCCCa -3'
miRNA:   3'- aACCUGUUGUaGGuGGU-------GUGGu--CGGG- -5'
30687 5' -54.7 NC_006552.1 + 33150 0.68 0.633126
Target:  5'- -gGGGCGuGCGguagcccUCCACgCGCagaauGCCAGCCCg -3'
miRNA:   3'- aaCCUGU-UGU-------AGGUG-GUG-----UGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 13526 0.68 0.634232
Target:  5'- -aGGuCGACG-CCAUCAaagggauGCCGGCCCa -3'
miRNA:   3'- aaCCuGUUGUaGGUGGUg------UGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 3640 0.68 0.645291
Target:  5'- -cGGACGcaaGCAcucgCCACCGCcCCAGCg- -3'
miRNA:   3'- aaCCUGU---UGUa---GGUGGUGuGGUCGgg -5'
30687 5' -54.7 NC_006552.1 + 55679 0.68 0.656337
Target:  5'- cUGcGCAGCAggUCACCcacGCGCCGGCCa -3'
miRNA:   3'- aACcUGUUGUa-GGUGG---UGUGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 11986 0.68 0.656337
Target:  5'- --uGACcGCgAUCCACgGCAUCAGCCa -3'
miRNA:   3'- aacCUGuUG-UAGGUGgUGUGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 59443 0.68 0.656337
Target:  5'- --uGACGGCGaCCAgCACGCCgaucAGCCCc -3'
miRNA:   3'- aacCUGUUGUaGGUgGUGUGG----UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 6842 0.68 0.667361
Target:  5'- -gGGGCAgu-UUCGCCgugGCCAGCCCa -3'
miRNA:   3'- aaCCUGUuguAGGUGGug-UGGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.