miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30687 5' -54.7 NC_006552.1 + 1608 1.1 0.000997
Target:  5'- cUUGGACAACAUCCACCACACCAGCCCg -3'
miRNA:   3'- -AACCUGUUGUAGGUGGUGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 5290 0.78 0.170336
Target:  5'- gUGGGCAACGUUCACCaaggcGCGCCGGaCCg -3'
miRNA:   3'- aACCUGUUGUAGGUGG-----UGUGGUCgGG- -5'
30687 5' -54.7 NC_006552.1 + 55716 0.75 0.26074
Target:  5'- aUGGGCgAGCAUCCACUgucGCACCAcaCCCa -3'
miRNA:   3'- aACCUG-UUGUAGGUGG---UGUGGUc-GGG- -5'
30687 5' -54.7 NC_006552.1 + 53630 0.73 0.35168
Target:  5'- -cGGugAuCuugcugCCACUGCGCCGGCCCa -3'
miRNA:   3'- aaCCugUuGua----GGUGGUGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 1835 0.72 0.40864
Target:  5'- -aGGGCAacccgguccgcaccuGCGUCgGCCACGCCAaaGCCa -3'
miRNA:   3'- aaCCUGU---------------UGUAGgUGGUGUGGU--CGGg -5'
30687 5' -54.7 NC_006552.1 + 54912 0.72 0.423754
Target:  5'- --cGACGAUAggUCGCCGCACCAGUCUu -3'
miRNA:   3'- aacCUGUUGUa-GGUGGUGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 51622 0.72 0.433369
Target:  5'- -aGGACAGaAUCCugCGCAUCAGgCUg -3'
miRNA:   3'- aaCCUGUUgUAGGugGUGUGGUCgGG- -5'
30687 5' -54.7 NC_006552.1 + 1444 0.71 0.443109
Target:  5'- -aGGACAACAUgaCCGCCgccaauauGCGCCAGgUCg -3'
miRNA:   3'- aaCCUGUUGUA--GGUGG--------UGUGGUCgGG- -5'
30687 5' -54.7 NC_006552.1 + 9253 0.71 0.443109
Target:  5'- -cGGACAagcGCAccuucaaccaguUCCGCCGCuucACCGGCCg -3'
miRNA:   3'- aaCCUGU---UGU------------AGGUGGUG---UGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 32691 0.71 0.462953
Target:  5'- gUGGACGGCAUCacgggAgCGCGCCaAGCCg -3'
miRNA:   3'- aACCUGUUGUAGg----UgGUGUGG-UCGGg -5'
30687 5' -54.7 NC_006552.1 + 63246 0.71 0.473047
Target:  5'- gUGGACGacgaggGCAUCUACCACggACCuGCaCCc -3'
miRNA:   3'- aACCUGU------UGUAGGUGGUG--UGGuCG-GG- -5'
30687 5' -54.7 NC_006552.1 + 24621 0.71 0.483252
Target:  5'- cUUGGugGccACGUaCCACgCACGCUGGUCCg -3'
miRNA:   3'- -AACCugU--UGUA-GGUG-GUGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 31599 0.7 0.511313
Target:  5'- -cGGAUAggucGCGUCguCCACGCCgucggcguaggcaaAGCCCa -3'
miRNA:   3'- aaCCUGU----UGUAGguGGUGUGG--------------UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 39246 0.7 0.514474
Target:  5'- -aGGACuGCA-CUACCagGCACCggAGCCCg -3'
miRNA:   3'- aaCCUGuUGUaGGUGG--UGUGG--UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 5026 0.7 0.514474
Target:  5'- -cGGcCAGCAcuUCCGCCGgAUCcGCCCa -3'
miRNA:   3'- aaCCuGUUGU--AGGUGGUgUGGuCGGG- -5'
30687 5' -54.7 NC_006552.1 + 6588 0.7 0.514474
Target:  5'- aUGGugGGCGUCggugGCCGCGCCGGgCa -3'
miRNA:   3'- aACCugUUGUAGg---UGGUGUGGUCgGg -5'
30687 5' -54.7 NC_006552.1 + 33816 0.7 0.525064
Target:  5'- cUGGugAACGUCaCAuCCGCACCgucggcGGCgCCg -3'
miRNA:   3'- aACCugUUGUAG-GU-GGUGUGG------UCG-GG- -5'
30687 5' -54.7 NC_006552.1 + 3345 0.7 0.525064
Target:  5'- -aGGGcCAGC-UCCGCCugAguuaCAGCCCa -3'
miRNA:   3'- aaCCU-GUUGuAGGUGGugUg---GUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 3576 0.7 0.525064
Target:  5'- -gGGACGGCAaCUGCCugAUCuggauGCCCg -3'
miRNA:   3'- aaCCUGUUGUaGGUGGugUGGu----CGGG- -5'
30687 5' -54.7 NC_006552.1 + 7867 0.7 0.525064
Target:  5'- cUGGcGCAGCucgacaucuUCCACgACACCaaggAGCCCg -3'
miRNA:   3'- aACC-UGUUGu--------AGGUGgUGUGG----UCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.