Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 522 | 0.66 | 0.742967 |
Target: 5'- -cGcGACAGagUAUgUGCCgaGCACCGGCCCa -3' miRNA: 3'- aaC-CUGUU--GUAgGUGG--UGUGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 557 | 0.66 | 0.742967 |
Target: 5'- -cGGcCGACgcuGUUCGCCGCGCC-GCCg -3' miRNA: 3'- aaCCuGUUG---UAGGUGGUGUGGuCGGg -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 1239 | 0.66 | 0.754446 |
Target: 5'- -cGGACAGCAaucugguggcgcgcgCCACCAacUACCuGGCCg -3' miRNA: 3'- aaCCUGUUGUa--------------GGUGGU--GUGG-UCGGg -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 1444 | 0.71 | 0.443109 |
Target: 5'- -aGGACAACAUgaCCGCCgccaauauGCGCCAGgUCg -3' miRNA: 3'- aaCCUGUUGUA--GGUGG--------UGUGGUCgGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 1608 | 1.1 | 0.000997 |
Target: 5'- cUUGGACAACAUCCACCACACCAGCCCg -3' miRNA: 3'- -AACCUGUUGUAGGUGGUGUGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 1835 | 0.72 | 0.40864 |
Target: 5'- -aGGGCAacccgguccgcaccuGCGUCgGCCACGCCAaaGCCa -3' miRNA: 3'- aaCCUGU---------------UGUAGgUGGUGUGGU--CGGg -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 3345 | 0.7 | 0.525064 |
Target: 5'- -aGGGcCAGC-UCCGCCugAguuaCAGCCCa -3' miRNA: 3'- aaCCU-GUUGuAGGUGGugUg---GUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 3511 | 0.66 | 0.742967 |
Target: 5'- -cGGACcuGGCcgCUcgACCACGCCGGCauCCu -3' miRNA: 3'- aaCCUG--UUGuaGG--UGGUGUGGUCG--GG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 3576 | 0.7 | 0.525064 |
Target: 5'- -gGGACGGCAaCUGCCugAUCuggauGCCCg -3' miRNA: 3'- aaCCUGUUGUaGGUGGugUGGu----CGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 3640 | 0.68 | 0.645291 |
Target: 5'- -cGGACGcaaGCAcucgCCACCGCcCCAGCg- -3' miRNA: 3'- aaCCUGU---UGUa---GGUGGUGuGGUCGgg -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 4928 | 0.68 | 0.612119 |
Target: 5'- -cGGGCuuuc-CCGCCGCGCCA-CCCg -3' miRNA: 3'- aaCCUGuuguaGGUGGUGUGGUcGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 5026 | 0.7 | 0.514474 |
Target: 5'- -cGGcCAGCAcuUCCGCCGgAUCcGCCCa -3' miRNA: 3'- aaCCuGUUGU--AGGUGGUgUGGuCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 5290 | 0.78 | 0.170336 |
Target: 5'- gUGGGCAACGUUCACCaaggcGCGCCGGaCCg -3' miRNA: 3'- aACCUGUUGUAGGUGG-----UGUGGUCgGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 6588 | 0.7 | 0.514474 |
Target: 5'- aUGGugGGCGUCggugGCCGCGCCGGgCa -3' miRNA: 3'- aACCugUUGUAGg---UGGUGUGGUCgGg -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 6784 | 0.67 | 0.678351 |
Target: 5'- -aGGGCAGCAaCCGCgAgUGCCAGgCCu -3' miRNA: 3'- aaCCUGUUGUaGGUGgU-GUGGUCgGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 6842 | 0.68 | 0.667361 |
Target: 5'- -gGGGCAgu-UUCGCCgugGCCAGCCCa -3' miRNA: 3'- aaCCUGUuguAGGUGGug-UGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 7867 | 0.7 | 0.525064 |
Target: 5'- cUGGcGCAGCucgacaucuUCCACgACACCaaggAGCCCg -3' miRNA: 3'- aACC-UGUUGu--------AGGUGgUGUGG----UCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 8062 | 0.67 | 0.721758 |
Target: 5'- cUGGACGACAaCCA--GCACCGGgaCCu -3' miRNA: 3'- aACCUGUUGUaGGUggUGUGGUCg-GG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 8713 | 0.66 | 0.773904 |
Target: 5'- -aGGGCGGCGUCCaguGCCuguuCACCGaguacugacgauGCCUc -3' miRNA: 3'- aaCCUGUUGUAGG---UGGu---GUGGU------------CGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 8924 | 0.69 | 0.5573 |
Target: 5'- -aGGcCGGCGUCCGCCAguuCGCCAuccagcagcGCCUg -3' miRNA: 3'- aaCCuGUUGUAGGUGGU---GUGGU---------CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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