miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30687 5' -54.7 NC_006552.1 + 9253 0.71 0.443109
Target:  5'- -cGGACAagcGCAccuucaaccaguUCCGCCGCuucACCGGCCg -3'
miRNA:   3'- aaCCUGU---UGU------------AGGUGGUG---UGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 10242 0.66 0.75755
Target:  5'- cUGGACGACGcugguaaggauUCCgacgaguucgcacagGCCgACGCCAGCUUc -3'
miRNA:   3'- aACCUGUUGU-----------AGG---------------UGG-UGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 11180 0.66 0.747158
Target:  5'- cUGGccGCgAGCcgCCACCGCggccgaccacucaccACCAGCCg -3'
miRNA:   3'- aACC--UG-UUGuaGGUGGUG---------------UGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 11986 0.68 0.656337
Target:  5'- --uGACcGCgAUCCACgGCAUCAGCCa -3'
miRNA:   3'- aacCUGuUG-UAGGUGgUGUGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 12990 0.69 0.579104
Target:  5'- -aGGACuugcucguCGUCgACCA-GCCGGCCCu -3'
miRNA:   3'- aaCCUGuu------GUAGgUGGUgUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 13526 0.68 0.634232
Target:  5'- -aGGuCGACG-CCAUCAaagggauGCCGGCCCa -3'
miRNA:   3'- aaCCuGUUGUaGGUGGUg------UGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 13736 0.66 0.742967
Target:  5'- -aGGAauuGACcacaCugCGCACCAGCCUg -3'
miRNA:   3'- aaCCUg--UUGuag-GugGUGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 14564 0.66 0.763725
Target:  5'- -aGGACAugACGUCCAUCAa--CGGCUUg -3'
miRNA:   3'- aaCCUGU--UGUAGGUGGUgugGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 14698 0.68 0.612119
Target:  5'- -cGGaACAACcagCCACgGCGCCGGCagCCg -3'
miRNA:   3'- aaCC-UGUUGua-GGUGgUGUGGUCG--GG- -5'
30687 5' -54.7 NC_006552.1 + 15353 0.67 0.700188
Target:  5'- --cGACGACAUgCGCC--ACCGGCUCg -3'
miRNA:   3'- aacCUGUUGUAgGUGGugUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 18099 0.67 0.700188
Target:  5'- ---cGCuccCAcCCGCCugGCCAGCCCc -3'
miRNA:   3'- aaccUGuu-GUaGGUGGugUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 19456 0.67 0.678351
Target:  5'- --cGACAG-AUCgAUCACACCGGCCg -3'
miRNA:   3'- aacCUGUUgUAGgUGGUGUGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 20113 0.67 0.709933
Target:  5'- -cGGGCGAUugGUCaACCACAUCgugugguAGCCCu -3'
miRNA:   3'- aaCCUGUUG--UAGgUGGUGUGG-------UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 23735 0.66 0.753408
Target:  5'- cUUGGuagcugacCGACAUUC-CCauGCAUCAGCCCu -3'
miRNA:   3'- -AACCu-------GUUGUAGGuGG--UGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 24184 0.66 0.763725
Target:  5'- gUGGGCGAacagcaguuCAUCCGCguugGCugCGGCCg -3'
miRNA:   3'- aACCUGUU---------GUAGGUGg---UGugGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 24621 0.71 0.483252
Target:  5'- cUUGGugGccACGUaCCACgCACGCUGGUCCg -3'
miRNA:   3'- -AACCugU--UGUA-GGUG-GUGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 24840 0.66 0.732413
Target:  5'- cUGGugGaaccagauggcGCAgCCAUCGCugCGGCCg -3'
miRNA:   3'- aACCugU-----------UGUaGGUGGUGugGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 25285 0.68 0.633126
Target:  5'- cUGGACAGCA-CC-CCAguucuuuCGCCugcGCCCa -3'
miRNA:   3'- aACCUGUUGUaGGuGGU-------GUGGu--CGGG- -5'
30687 5' -54.7 NC_006552.1 + 27154 0.66 0.763725
Target:  5'- -cGGAUGGCcUCCACCACGUCGcGCUUg -3'
miRNA:   3'- aaCCUGUUGuAGGUGGUGUGGU-CGGG- -5'
30687 5' -54.7 NC_006552.1 + 29617 0.66 0.773904
Target:  5'- -cGGACGGga--CGCCAC-CCAGUCCc -3'
miRNA:   3'- aaCCUGUUguagGUGGUGuGGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.