miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30687 5' -54.7 NC_006552.1 + 29617 0.66 0.773904
Target:  5'- -cGGACGGga--CGCCAC-CCAGUCCc -3'
miRNA:   3'- aaCCUGUUguagGUGGUGuGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 52966 0.66 0.773904
Target:  5'- -cGGGCGGcCAUCCGCgCACGgC-GCUCg -3'
miRNA:   3'- aaCCUGUU-GUAGGUG-GUGUgGuCGGG- -5'
30687 5' -54.7 NC_006552.1 + 27154 0.66 0.763725
Target:  5'- -cGGAUGGCcUCCACCACGUCGcGCUUg -3'
miRNA:   3'- aaCCUGUUGuAGGUGGUGUGGU-CGGG- -5'
30687 5' -54.7 NC_006552.1 + 53932 0.66 0.763725
Target:  5'- -cGGAUcGCGUCgGCCAauaUGGCCCa -3'
miRNA:   3'- aaCCUGuUGUAGgUGGUgugGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 14564 0.66 0.763725
Target:  5'- -aGGACAugACGUCCAUCAa--CGGCUUg -3'
miRNA:   3'- aaCCUGU--UGUAGGUGGUgugGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 24184 0.66 0.763725
Target:  5'- gUGGGCGAacagcaguuCAUCCGCguugGCugCGGCCg -3'
miRNA:   3'- aACCUGUU---------GUAGGUGg---UGugGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 10242 0.66 0.75755
Target:  5'- cUGGACGACGcugguaaggauUCCgacgaguucgcacagGCCgACGCCAGCUUc -3'
miRNA:   3'- aACCUGUUGU-----------AGG---------------UGG-UGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 55679 0.68 0.656337
Target:  5'- cUGcGCAGCAggUCACCcacGCGCCGGCCa -3'
miRNA:   3'- aACcUGUUGUa-GGUGG---UGUGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 23735 0.66 0.753408
Target:  5'- cUUGGuagcugacCGACAUUC-CCauGCAUCAGCCCu -3'
miRNA:   3'- -AACCu-------GUUGUAGGuGG--UGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 32422 0.66 0.753408
Target:  5'- -cGGGCAcgcuacGCAcCUGCCcuugggugaACAUCAGCCCg -3'
miRNA:   3'- aaCCUGU------UGUaGGUGG---------UGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 53366 0.66 0.753408
Target:  5'- -cGGACAGaagauUCUGCUugGcCCAGUCCg -3'
miRNA:   3'- aaCCUGUUgu---AGGUGGugU-GGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 65188 0.66 0.753408
Target:  5'- -gGGGCAGCcugcUCCaACCGaucaagauaAUCAGCCCa -3'
miRNA:   3'- aaCCUGUUGu---AGG-UGGUg--------UGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 11180 0.66 0.747158
Target:  5'- cUGGccGCgAGCcgCCACCGCggccgaccacucaccACCAGCCg -3'
miRNA:   3'- aACC--UG-UUGuaGGUGGUG---------------UGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 522 0.66 0.742967
Target:  5'- -cGcGACAGagUAUgUGCCgaGCACCGGCCCa -3'
miRNA:   3'- aaC-CUGUU--GUAgGUGG--UGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 557 0.66 0.742967
Target:  5'- -cGGcCGACgcuGUUCGCCGCGCC-GCCg -3'
miRNA:   3'- aaCCuGUUG---UAGGUGGUGUGGuCGGg -5'
30687 5' -54.7 NC_006552.1 + 3511 0.66 0.742967
Target:  5'- -cGGACcuGGCcgCUcgACCACGCCGGCauCCu -3'
miRNA:   3'- aaCCUG--UUGuaGG--UGGUGUGGUCG--GG- -5'
30687 5' -54.7 NC_006552.1 + 32691 0.71 0.462953
Target:  5'- gUGGACGGCAUCacgggAgCGCGCCaAGCCg -3'
miRNA:   3'- aACCUGUUGUAGg----UgGUGUGG-UCGGg -5'
30687 5' -54.7 NC_006552.1 + 3576 0.7 0.525064
Target:  5'- -gGGACGGCAaCUGCCugAUCuggauGCCCg -3'
miRNA:   3'- aaCCUGUUGUaGGUGGugUGGu----CGGG- -5'
30687 5' -54.7 NC_006552.1 + 7867 0.7 0.525064
Target:  5'- cUGGcGCAGCucgacaucuUCCACgACACCaaggAGCCCg -3'
miRNA:   3'- aACC-UGUUGu--------AGGUGgUGUGG----UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 6588 0.7 0.514474
Target:  5'- aUGGugGGCGUCggugGCCGCGCCGGgCa -3'
miRNA:   3'- aACCugUUGUAGg---UGGUGUGGUCgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.