miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30687 5' -54.7 NC_006552.1 + 31599 0.7 0.511313
Target:  5'- -cGGAUAggucGCGUCguCCACGCCgucggcguaggcaaAGCCCa -3'
miRNA:   3'- aaCCUGU----UGUAGguGGUGUGG--------------UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 32422 0.66 0.753408
Target:  5'- -cGGGCAcgcuacGCAcCUGCCcuugggugaACAUCAGCCCg -3'
miRNA:   3'- aaCCUGU------UGUaGGUGG---------UGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 32691 0.71 0.462953
Target:  5'- gUGGACGGCAUCacgggAgCGCGCCaAGCCg -3'
miRNA:   3'- aACCUGUUGUAGg----UgGUGUGG-UCGGg -5'
30687 5' -54.7 NC_006552.1 + 32733 0.67 0.678351
Target:  5'- -cGGcCAGCGUCaUACCGCGCCA-CCg -3'
miRNA:   3'- aaCCuGUUGUAG-GUGGUGUGGUcGGg -5'
30687 5' -54.7 NC_006552.1 + 33150 0.68 0.633126
Target:  5'- -gGGGCGuGCGguagcccUCCACgCGCagaauGCCAGCCCg -3'
miRNA:   3'- aaCCUGU-UGU-------AGGUG-GUG-----UGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 33816 0.7 0.525064
Target:  5'- cUGGugAACGUCaCAuCCGCACCgucggcGGCgCCg -3'
miRNA:   3'- aACCugUUGUAG-GU-GGUGUGG------UCG-GG- -5'
30687 5' -54.7 NC_006552.1 + 34608 0.66 0.742967
Target:  5'- aUUGGuaGCAGCGUCgCACUAUcaucgguacucgGCCAGCUa -3'
miRNA:   3'- -AACC--UGUUGUAG-GUGGUG------------UGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 34780 0.69 0.5573
Target:  5'- gUGGAaGAUAaUCGCCAgGCgCAGCCCg -3'
miRNA:   3'- aACCUgUUGUaGGUGGUgUG-GUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 36889 0.67 0.711012
Target:  5'- gUGGAuCGACAgagCCGCCAgGCCcauGUUCa -3'
miRNA:   3'- aACCU-GUUGUa--GGUGGUgUGGu--CGGG- -5'
30687 5' -54.7 NC_006552.1 + 38187 0.67 0.689298
Target:  5'- aUUGGGCAcgcccACAUCCACUGaauCCAaCCCu -3'
miRNA:   3'- -AACCUGU-----UGUAGGUGGUgu-GGUcGGG- -5'
30687 5' -54.7 NC_006552.1 + 38973 0.69 0.601084
Target:  5'- aUGGGCGACAgguggCgaaACUGCGCCggucGGCCCa -3'
miRNA:   3'- aACCUGUUGUa----Gg--UGGUGUGG----UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 39246 0.7 0.514474
Target:  5'- -aGGACuGCA-CUACCagGCACCggAGCCCg -3'
miRNA:   3'- aaCCUGuUGUaGGUGG--UGUGG--UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 43299 0.67 0.711012
Target:  5'- aUGGAUgcccCGUCCACCagcaGCGCCugcacGGCCUg -3'
miRNA:   3'- aACCUGuu--GUAGGUGG----UGUGG-----UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 48850 0.7 0.546484
Target:  5'- -cGGcCGGCugaCCGCCAugcagaaccgcCGCCGGCCCg -3'
miRNA:   3'- aaCCuGUUGua-GGUGGU-----------GUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 49664 0.66 0.732413
Target:  5'- cUGGAUGuCGUCCugCACGCCgauuggcgucggGGCUUg -3'
miRNA:   3'- aACCUGUuGUAGGugGUGUGG------------UCGGG- -5'
30687 5' -54.7 NC_006552.1 + 51622 0.72 0.433369
Target:  5'- -aGGACAGaAUCCugCGCAUCAGgCUg -3'
miRNA:   3'- aaCCUGUUgUAGGugGUGUGGUCgGG- -5'
30687 5' -54.7 NC_006552.1 + 52966 0.66 0.773904
Target:  5'- -cGGGCGGcCAUCCGCgCACGgC-GCUCg -3'
miRNA:   3'- aaCCUGUU-GUAGGUG-GUGUgGuCGGG- -5'
30687 5' -54.7 NC_006552.1 + 53211 0.7 0.535737
Target:  5'- -aGGugGAguaGUCCACCGucucggcgucCACCGGCUCg -3'
miRNA:   3'- aaCCugUUg--UAGGUGGU----------GUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 53366 0.66 0.753408
Target:  5'- -cGGACAGaagauUCUGCUugGcCCAGUCCg -3'
miRNA:   3'- aaCCUGUUgu---AGGUGGugU-GGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 53630 0.73 0.35168
Target:  5'- -cGGugAuCuugcugCCACUGCGCCGGCCCa -3'
miRNA:   3'- aaCCugUuGua----GGUGGUGUGGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.