Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 19456 | 0.67 | 0.678351 |
Target: 5'- --cGACAG-AUCgAUCACACCGGCCg -3' miRNA: 3'- aacCUGUUgUAGgUGGUGUGGUCGGg -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 18099 | 0.67 | 0.700188 |
Target: 5'- ---cGCuccCAcCCGCCugGCCAGCCCc -3' miRNA: 3'- aaccUGuu-GUaGGUGGugUGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 15353 | 0.67 | 0.700188 |
Target: 5'- --cGACGACAUgCGCC--ACCGGCUCg -3' miRNA: 3'- aacCUGUUGUAgGUGGugUGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 14698 | 0.68 | 0.612119 |
Target: 5'- -cGGaACAACcagCCACgGCGCCGGCagCCg -3' miRNA: 3'- aaCC-UGUUGua-GGUGgUGUGGUCG--GG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 14564 | 0.66 | 0.763725 |
Target: 5'- -aGGACAugACGUCCAUCAa--CGGCUUg -3' miRNA: 3'- aaCCUGU--UGUAGGUGGUgugGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 13736 | 0.66 | 0.742967 |
Target: 5'- -aGGAauuGACcacaCugCGCACCAGCCUg -3' miRNA: 3'- aaCCUg--UUGuag-GugGUGUGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 13526 | 0.68 | 0.634232 |
Target: 5'- -aGGuCGACG-CCAUCAaagggauGCCGGCCCa -3' miRNA: 3'- aaCCuGUUGUaGGUGGUg------UGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 12990 | 0.69 | 0.579104 |
Target: 5'- -aGGACuugcucguCGUCgACCA-GCCGGCCCu -3' miRNA: 3'- aaCCUGuu------GUAGgUGGUgUGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 11986 | 0.68 | 0.656337 |
Target: 5'- --uGACcGCgAUCCACgGCAUCAGCCa -3' miRNA: 3'- aacCUGuUG-UAGGUGgUGUGGUCGGg -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 11180 | 0.66 | 0.747158 |
Target: 5'- cUGGccGCgAGCcgCCACCGCggccgaccacucaccACCAGCCg -3' miRNA: 3'- aACC--UG-UUGuaGGUGGUG---------------UGGUCGGg -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 10242 | 0.66 | 0.75755 |
Target: 5'- cUGGACGACGcugguaaggauUCCgacgaguucgcacagGCCgACGCCAGCUUc -3' miRNA: 3'- aACCUGUUGU-----------AGG---------------UGG-UGUGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 9253 | 0.71 | 0.443109 |
Target: 5'- -cGGACAagcGCAccuucaaccaguUCCGCCGCuucACCGGCCg -3' miRNA: 3'- aaCCUGU---UGU------------AGGUGGUG---UGGUCGGg -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 8924 | 0.69 | 0.5573 |
Target: 5'- -aGGcCGGCGUCCGCCAguuCGCCAuccagcagcGCCUg -3' miRNA: 3'- aaCCuGUUGUAGGUGGU---GUGGU---------CGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 8713 | 0.66 | 0.773904 |
Target: 5'- -aGGGCGGCGUCCaguGCCuguuCACCGaguacugacgauGCCUc -3' miRNA: 3'- aaCCUGUUGUAGG---UGGu---GUGGU------------CGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 8062 | 0.67 | 0.721758 |
Target: 5'- cUGGACGACAaCCA--GCACCGGgaCCu -3' miRNA: 3'- aACCUGUUGUaGGUggUGUGGUCg-GG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 7867 | 0.7 | 0.525064 |
Target: 5'- cUGGcGCAGCucgacaucuUCCACgACACCaaggAGCCCg -3' miRNA: 3'- aACC-UGUUGu--------AGGUGgUGUGG----UCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 6842 | 0.68 | 0.667361 |
Target: 5'- -gGGGCAgu-UUCGCCgugGCCAGCCCa -3' miRNA: 3'- aaCCUGUuguAGGUGGug-UGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 6784 | 0.67 | 0.678351 |
Target: 5'- -aGGGCAGCAaCCGCgAgUGCCAGgCCu -3' miRNA: 3'- aaCCUGUUGUaGGUGgU-GUGGUCgGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 6588 | 0.7 | 0.514474 |
Target: 5'- aUGGugGGCGUCggugGCCGCGCCGGgCa -3' miRNA: 3'- aACCugUUGUAGg---UGGUGUGGUCgGg -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 5290 | 0.78 | 0.170336 |
Target: 5'- gUGGGCAACGUUCACCaaggcGCGCCGGaCCg -3' miRNA: 3'- aACCUGUUGUAGGUGG-----UGUGGUCgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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