miRNA display CGI


Results 61 - 72 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30687 5' -54.7 NC_006552.1 + 5026 0.7 0.514474
Target:  5'- -cGGcCAGCAcuUCCGCCGgAUCcGCCCa -3'
miRNA:   3'- aaCCuGUUGU--AGGUGGUgUGGuCGGG- -5'
30687 5' -54.7 NC_006552.1 + 4928 0.68 0.612119
Target:  5'- -cGGGCuuuc-CCGCCGCGCCA-CCCg -3'
miRNA:   3'- aaCCUGuuguaGGUGGUGUGGUcGGG- -5'
30687 5' -54.7 NC_006552.1 + 3640 0.68 0.645291
Target:  5'- -cGGACGcaaGCAcucgCCACCGCcCCAGCg- -3'
miRNA:   3'- aaCCUGU---UGUa---GGUGGUGuGGUCGgg -5'
30687 5' -54.7 NC_006552.1 + 3576 0.7 0.525064
Target:  5'- -gGGACGGCAaCUGCCugAUCuggauGCCCg -3'
miRNA:   3'- aaCCUGUUGUaGGUGGugUGGu----CGGG- -5'
30687 5' -54.7 NC_006552.1 + 3511 0.66 0.742967
Target:  5'- -cGGACcuGGCcgCUcgACCACGCCGGCauCCu -3'
miRNA:   3'- aaCCUG--UUGuaGG--UGGUGUGGUCG--GG- -5'
30687 5' -54.7 NC_006552.1 + 3345 0.7 0.525064
Target:  5'- -aGGGcCAGC-UCCGCCugAguuaCAGCCCa -3'
miRNA:   3'- aaCCU-GUUGuAGGUGGugUg---GUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 1835 0.72 0.40864
Target:  5'- -aGGGCAacccgguccgcaccuGCGUCgGCCACGCCAaaGCCa -3'
miRNA:   3'- aaCCUGU---------------UGUAGgUGGUGUGGU--CGGg -5'
30687 5' -54.7 NC_006552.1 + 1608 1.1 0.000997
Target:  5'- cUUGGACAACAUCCACCACACCAGCCCg -3'
miRNA:   3'- -AACCUGUUGUAGGUGGUGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 1444 0.71 0.443109
Target:  5'- -aGGACAACAUgaCCGCCgccaauauGCGCCAGgUCg -3'
miRNA:   3'- aaCCUGUUGUA--GGUGG--------UGUGGUCgGG- -5'
30687 5' -54.7 NC_006552.1 + 1239 0.66 0.754446
Target:  5'- -cGGACAGCAaucugguggcgcgcgCCACCAacUACCuGGCCg -3'
miRNA:   3'- aaCCUGUUGUa--------------GGUGGU--GUGG-UCGGg -5'
30687 5' -54.7 NC_006552.1 + 557 0.66 0.742967
Target:  5'- -cGGcCGACgcuGUUCGCCGCGCC-GCCg -3'
miRNA:   3'- aaCCuGUUG---UAGGUGGUGUGGuCGGg -5'
30687 5' -54.7 NC_006552.1 + 522 0.66 0.742967
Target:  5'- -cGcGACAGagUAUgUGCCgaGCACCGGCCCa -3'
miRNA:   3'- aaC-CUGUU--GUAgGUGG--UGUGGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.