Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30687 | 5' | -54.7 | NC_006552.1 | + | 57943 | 0.68 | 0.623172 |
Target: 5'- cUGGugGACcUCCugCggggACACCAcCCCa -3' miRNA: 3'- aACCugUUGuAGGugG----UGUGGUcGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 4928 | 0.68 | 0.612119 |
Target: 5'- -cGGGCuuuc-CCGCCGCGCCA-CCCg -3' miRNA: 3'- aaCCUGuuguaGGUGGUGUGGUcGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 14698 | 0.68 | 0.612119 |
Target: 5'- -cGGaACAACcagCCACgGCGCCGGCagCCg -3' miRNA: 3'- aaCC-UGUUGua-GGUGgUGUGGUCG--GG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 61760 | 0.69 | 0.601084 |
Target: 5'- -gGGGCAcacCAUguucCCGCCuacgaacucgcACGCCGGCCCa -3' miRNA: 3'- aaCCUGUu--GUA----GGUGG-----------UGUGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 34780 | 0.69 | 0.5573 |
Target: 5'- gUGGAaGAUAaUCGCCAgGCgCAGCCCg -3' miRNA: 3'- aACCUgUUGUaGGUGGUgUG-GUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 8924 | 0.69 | 0.5573 |
Target: 5'- -aGGcCGGCGUCCGCCAguuCGCCAuccagcagcGCCUg -3' miRNA: 3'- aaCCuGUUGUAGGUGGU---GUGGU---------CGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 55284 | 0.69 | 0.568175 |
Target: 5'- cUGGAUAGCAUCggucagCGCCuuGCCGGUCUu -3' miRNA: 3'- aACCUGUUGUAG------GUGGugUGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 12990 | 0.69 | 0.579104 |
Target: 5'- -aGGACuugcucguCGUCgACCA-GCCGGCCCu -3' miRNA: 3'- aaCCUGuu------GUAGgUGGUgUGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 38973 | 0.69 | 0.601084 |
Target: 5'- aUGGGCGACAgguggCgaaACUGCGCCggucGGCCCa -3' miRNA: 3'- aACCUGUUGUa----Gg--UGGUGUGG----UCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 3345 | 0.7 | 0.525064 |
Target: 5'- -aGGGcCAGC-UCCGCCugAguuaCAGCCCa -3' miRNA: 3'- aaCCU-GUUGuAGGUGGugUg---GUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 31599 | 0.7 | 0.511313 |
Target: 5'- -cGGAUAggucGCGUCguCCACGCCgucggcguaggcaaAGCCCa -3' miRNA: 3'- aaCCUGU----UGUAGguGGUGUGG--------------UCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 39246 | 0.7 | 0.514474 |
Target: 5'- -aGGACuGCA-CUACCagGCACCggAGCCCg -3' miRNA: 3'- aaCCUGuUGUaGGUGG--UGUGG--UCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 5026 | 0.7 | 0.514474 |
Target: 5'- -cGGcCAGCAcuUCCGCCGgAUCcGCCCa -3' miRNA: 3'- aaCCuGUUGU--AGGUGGUgUGGuCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 6588 | 0.7 | 0.514474 |
Target: 5'- aUGGugGGCGUCggugGCCGCGCCGGgCa -3' miRNA: 3'- aACCugUUGUAGg---UGGUGUGGUCgGg -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 7867 | 0.7 | 0.525064 |
Target: 5'- cUGGcGCAGCucgacaucuUCCACgACACCaaggAGCCCg -3' miRNA: 3'- aACC-UGUUGu--------AGGUGgUGUGG----UCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 3576 | 0.7 | 0.525064 |
Target: 5'- -gGGACGGCAaCUGCCugAUCuggauGCCCg -3' miRNA: 3'- aaCCUGUUGUaGGUGGugUGGu----CGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 33816 | 0.7 | 0.525064 |
Target: 5'- cUGGugAACGUCaCAuCCGCACCgucggcGGCgCCg -3' miRNA: 3'- aACCugUUGUAG-GU-GGUGUGG------UCG-GG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 53211 | 0.7 | 0.535737 |
Target: 5'- -aGGugGAguaGUCCACCGucucggcgucCACCGGCUCg -3' miRNA: 3'- aaCCugUUg--UAGGUGGU----------GUGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 60461 | 0.7 | 0.546484 |
Target: 5'- -cGaGGCGGCGUCUcCUGCACCAGCUUc -3' miRNA: 3'- aaC-CUGUUGUAGGuGGUGUGGUCGGG- -5' |
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30687 | 5' | -54.7 | NC_006552.1 | + | 48850 | 0.7 | 0.546484 |
Target: 5'- -cGGcCGGCugaCCGCCAugcagaaccgcCGCCGGCCCg -3' miRNA: 3'- aaCCuGUUGua-GGUGGU-----------GUGGUCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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