miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30688 5' -59.2 NC_006552.1 + 43330 0.66 0.587044
Target:  5'- cGCCGCcaGAUGGUccAGCaCCagCGCGGCAa -3'
miRNA:   3'- cCGGCG--UUGCCAc-UUG-GGa-GCGCCGU- -5'
30688 5' -59.2 NC_006552.1 + 49995 0.66 0.587044
Target:  5'- cGGCCuuGAUGGUGccgguCgCCUUGCGGUu -3'
miRNA:   3'- -CCGGcgUUGCCACuu---G-GGAGCGCCGu -5'
30688 5' -59.2 NC_006552.1 + 43386 0.66 0.585995
Target:  5'- uGGUCGCcccccACGGUGAuguCCUCGaucaccaCGGCAu -3'
miRNA:   3'- -CCGGCGu----UGCCACUug-GGAGC-------GCCGU- -5'
30688 5' -59.2 NC_006552.1 + 2818 0.66 0.57553
Target:  5'- uGGaCCGCAACuGUucgacugGAACCC-CGCGGa- -3'
miRNA:   3'- -CC-GGCGUUGcCA-------CUUGGGaGCGCCgu -5'
30688 5' -59.2 NC_006552.1 + 5129 0.66 0.555769
Target:  5'- aGGCCuGCGGCGGUcGGGCCaCUCuccaGCaGCu -3'
miRNA:   3'- -CCGG-CGUUGCCA-CUUGG-GAG----CGcCGu -5'
30688 5' -59.2 NC_006552.1 + 28992 0.66 0.535187
Target:  5'- cGGCUGCGACGuUGGGCUCgUCGCuGUc -3'
miRNA:   3'- -CCGGCGUUGCcACUUGGG-AGCGcCGu -5'
30688 5' -59.2 NC_006552.1 + 35983 0.66 0.535187
Target:  5'- uGGCUGauGCGGUGGACauccuggaUCGCGGUc -3'
miRNA:   3'- -CCGGCguUGCCACUUGgg------AGCGCCGu -5'
30688 5' -59.2 NC_006552.1 + 2091 0.66 0.534165
Target:  5'- uGCCGUgcGAUGGUGGaguugAUCCUCaucgagcGCGGCGa -3'
miRNA:   3'- cCGGCG--UUGCCACU-----UGGGAG-------CGCCGU- -5'
30688 5' -59.2 NC_006552.1 + 36588 0.67 0.524996
Target:  5'- aGGauCgGCGGCGGUucGAugCCUUccaGCGGCAg -3'
miRNA:   3'- -CC--GgCGUUGCCA--CUugGGAG---CGCCGU- -5'
30688 5' -59.2 NC_006552.1 + 3207 0.67 0.51488
Target:  5'- uGCaGCAGCGaGgccGAACUCUgCGCGGCGu -3'
miRNA:   3'- cCGgCGUUGC-Ca--CUUGGGA-GCGCCGU- -5'
30688 5' -59.2 NC_006552.1 + 31826 0.67 0.51488
Target:  5'- gGGCCaGC-ACGGgccGGCCCUUcguaggGCGGCGg -3'
miRNA:   3'- -CCGG-CGuUGCCac-UUGGGAG------CGCCGU- -5'
30688 5' -59.2 NC_006552.1 + 33191 0.68 0.465598
Target:  5'- cGGCUGC-GCGGUG--UCCUUGuCGGCc -3'
miRNA:   3'- -CCGGCGuUGCCACuuGGGAGC-GCCGu -5'
30688 5' -59.2 NC_006552.1 + 36530 0.68 0.465598
Target:  5'- uGGCUGCAGUGGUG-AUCUgcgGCGGCGc -3'
miRNA:   3'- -CCGGCGUUGCCACuUGGGag-CGCCGU- -5'
30688 5' -59.2 NC_006552.1 + 53071 0.68 0.459847
Target:  5'- uGCCGC-ACGGUGuccaGgaacuuggccuugccGCCCUCGaUGGCAu -3'
miRNA:   3'- cCGGCGuUGCCAC----U---------------UGGGAGC-GCCGU- -5'
30688 5' -59.2 NC_006552.1 + 56050 0.68 0.446577
Target:  5'- uGCCGCcgucacccuGCGcGU-AGCCgCUCGCGGCAu -3'
miRNA:   3'- cCGGCGu--------UGC-CAcUUGG-GAGCGCCGU- -5'
30688 5' -59.2 NC_006552.1 + 45636 0.68 0.427996
Target:  5'- cGGCCGCuagcugAGCGGUGuacugccccagGGCCUUCGCcGCc -3'
miRNA:   3'- -CCGGCG------UUGCCAC-----------UUGGGAGCGcCGu -5'
30688 5' -59.2 NC_006552.1 + 21318 0.68 0.427996
Target:  5'- uGGCC-CAuGCGGUGGACCag-GCGGUg -3'
miRNA:   3'- -CCGGcGU-UGCCACUUGGgagCGCCGu -5'
30688 5' -59.2 NC_006552.1 + 20398 0.68 0.417973
Target:  5'- aGCgGCAACcGUGAaucguccGCCCUCcCGGCGa -3'
miRNA:   3'- cCGgCGUUGcCACU-------UGGGAGcGCCGU- -5'
30688 5' -59.2 NC_006552.1 + 7689 0.69 0.39225
Target:  5'- gGGCCGCc-CGGUGAA----CGCGGCAa -3'
miRNA:   3'- -CCGGCGuuGCCACUUgggaGCGCCGU- -5'
30688 5' -59.2 NC_006552.1 + 57177 0.7 0.326841
Target:  5'- aGCgCGaCAGCGGUGcauAGCCCUCGCccuGCAa -3'
miRNA:   3'- cCG-GC-GUUGCCAC---UUGGGAGCGc--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.