miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30689 3' -56.3 NC_006552.1 + 61619 0.74 0.286679
Target:  5'- uGC-UGGCCGAgcCGCCGgCGCCGgcAGGACu -3'
miRNA:   3'- -CGuACCGGUU--GCGGCaGCGGC--UCUUG- -5'
30689 3' -56.3 NC_006552.1 + 55818 0.68 0.611017
Target:  5'- uGCcUGGCCAcugccGCGCaCGUCGCCccguGCg -3'
miRNA:   3'- -CGuACCGGU-----UGCG-GCAGCGGcucuUG- -5'
30689 3' -56.3 NC_006552.1 + 55278 0.69 0.536417
Target:  5'- aGCAUcGGUCAGCGCC-UUGCCGGu--- -3'
miRNA:   3'- -CGUA-CCGGUUGCGGcAGCGGCUcuug -5'
30689 3' -56.3 NC_006552.1 + 52298 0.67 0.664978
Target:  5'- gGCGUGcGCCuuGAUGUCGUCGUCGGu--- -3'
miRNA:   3'- -CGUAC-CGG--UUGCGGCAGCGGCUcuug -5'
30689 3' -56.3 NC_006552.1 + 47292 0.71 0.408329
Target:  5'- gGCcUGGCgAACGCUaUCGgcCCGAGAGCu -3'
miRNA:   3'- -CGuACCGgUUGCGGcAGC--GGCUCUUG- -5'
30689 3' -56.3 NC_006552.1 + 43145 0.74 0.286679
Target:  5'- gGCcUGGCCAGUGCUGUCGCUGAu-GCg -3'
miRNA:   3'- -CGuACCGGUUGCGGCAGCGGCUcuUG- -5'
30689 3' -56.3 NC_006552.1 + 41373 0.73 0.339609
Target:  5'- -gAUGGCCAacucACGCgCGcCGCCGGcGGACa -3'
miRNA:   3'- cgUACCGGU----UGCG-GCaGCGGCU-CUUG- -5'
30689 3' -56.3 NC_006552.1 + 40472 0.66 0.675721
Target:  5'- cGUA-GGCCAccaGCCGgCGCCGGGccuGCu -3'
miRNA:   3'- -CGUaCCGGUug-CGGCaGCGGCUCu--UG- -5'
30689 3' -56.3 NC_006552.1 + 38912 0.68 0.600242
Target:  5'- cCGUGGCC-GCGCCcagcggguaGUCGCCGGccAACa -3'
miRNA:   3'- cGUACCGGuUGCGG---------CAGCGGCUc-UUG- -5'
30689 3' -56.3 NC_006552.1 + 34634 0.66 0.718189
Target:  5'- ---cGGCCc-CGCCGguccacagCGCCGGGAu- -3'
miRNA:   3'- cguaCCGGuuGCGGCa-------GCGGCUCUug -5'
30689 3' -56.3 NC_006552.1 + 33171 0.72 0.381555
Target:  5'- ---cGGCCAGCGCCauGUCaGCCaGGGGCg -3'
miRNA:   3'- cguaCCGGUUGCGG--CAG-CGGcUCUUG- -5'
30689 3' -56.3 NC_006552.1 + 32491 0.68 0.568105
Target:  5'- ---cGGCCGGCGCgGg-GCCGguGGAGCg -3'
miRNA:   3'- cguaCCGGUUGCGgCagCGGC--UCUUG- -5'
30689 3' -56.3 NC_006552.1 + 32455 0.66 0.686423
Target:  5'- cGCgAUGGUUGaggaaucgacGCGCCagGUCGCCGGGcACg -3'
miRNA:   3'- -CG-UACCGGU----------UGCGG--CAGCGGCUCuUG- -5'
30689 3' -56.3 NC_006552.1 + 32315 0.71 0.405599
Target:  5'- aGCAUGGgC-ACGCCGUCGCuCGccaucugcgccaccAGGGCc -3'
miRNA:   3'- -CGUACCgGuUGCGGCAGCG-GC--------------UCUUG- -5'
30689 3' -56.3 NC_006552.1 + 27034 0.66 0.697076
Target:  5'- uGC-UGGCCGcgguaGCUGUuggUGCUGGGAACg -3'
miRNA:   3'- -CGuACCGGUug---CGGCA---GCGGCUCUUG- -5'
30689 3' -56.3 NC_006552.1 + 24212 0.66 0.71714
Target:  5'- aCGUGGCCAcgcgcacACuGCUGUUGuuGuGGGCg -3'
miRNA:   3'- cGUACCGGU-------UG-CGGCAGCggCuCUUG- -5'
30689 3' -56.3 NC_006552.1 + 24055 0.67 0.664978
Target:  5'- cGCgAUGauGCCGcaGCGCUgGUCGCCGuuGAACa -3'
miRNA:   3'- -CG-UAC--CGGU--UGCGG-CAGCGGCu-CUUG- -5'
30689 3' -56.3 NC_006552.1 + 24019 0.66 0.725505
Target:  5'- cGCAUGguccaGCCAcaugaucgcgaucaGCGUCGUaaaGCCGAGcuGACg -3'
miRNA:   3'- -CGUAC-----CGGU--------------UGCGGCAg--CGGCUC--UUG- -5'
30689 3' -56.3 NC_006552.1 + 17540 0.71 0.414743
Target:  5'- aGCGUGGCCG--GCUGUCGggaucucaggucccCCGAGAAa -3'
miRNA:   3'- -CGUACCGGUugCGGCAGC--------------GGCUCUUg -5'
30689 3' -56.3 NC_006552.1 + 16614 0.71 0.408329
Target:  5'- uGCAcauUGG-CGACGacaucaccgugaCCGUCGUCGAGAACa -3'
miRNA:   3'- -CGU---ACCgGUUGC------------GGCAGCGGCUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.