miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30690 3' -60 NC_006552.1 + 45456 0.66 0.516382
Target:  5'- -uGGCGCUGGcCGcu-GCGCgCCAGgCu -3'
miRNA:   3'- guCCGCGACCuGUucuCGCG-GGUCgG- -5'
30690 3' -60 NC_006552.1 + 38662 0.66 0.506263
Target:  5'- -cGGCGCcGGgguguccaGCGucaGGCGCUCGGCCu -3'
miRNA:   3'- guCCGCGaCC--------UGUuc-UCGCGGGUCGG- -5'
30690 3' -60 NC_006552.1 + 27434 0.66 0.496231
Target:  5'- uCGGGCGCUGGuaucccGCGCUCuGCa -3'
miRNA:   3'- -GUCCGCGACCuguucuCGCGGGuCGg -5'
30690 3' -60 NC_006552.1 + 50714 0.66 0.496231
Target:  5'- cCAGGuCGC-GGAUggGGGCaUCCAGgCg -3'
miRNA:   3'- -GUCC-GCGaCCUGuuCUCGcGGGUCgG- -5'
30690 3' -60 NC_006552.1 + 23807 0.66 0.496231
Target:  5'- aCAGGCGCcacucagGGucagcCAGGcAGCGCgCCAGUUc -3'
miRNA:   3'- -GUCCGCGa------CCu----GUUC-UCGCG-GGUCGG- -5'
30690 3' -60 NC_006552.1 + 59385 0.66 0.476443
Target:  5'- --cGCGCcc-GCAAGGGCGCC-AGCCa -3'
miRNA:   3'- gucCGCGaccUGUUCUCGCGGgUCGG- -5'
30690 3' -60 NC_006552.1 + 48389 0.66 0.476443
Target:  5'- aCAGGUgccaacGCUGGAgcc-AGCGCCCGaacGCCa -3'
miRNA:   3'- -GUCCG------CGACCUguucUCGCGGGU---CGG- -5'
30690 3' -60 NC_006552.1 + 2606 0.66 0.466696
Target:  5'- ----gGCUcGACAAGGGCGCCgAGCg -3'
miRNA:   3'- guccgCGAcCUGUUCUCGCGGgUCGg -5'
30690 3' -60 NC_006552.1 + 58043 0.67 0.457054
Target:  5'- aCAGGCGCgccacgcuguUGGACGcaAGUGCUCgAGCa -3'
miRNA:   3'- -GUCCGCG----------ACCUGUucUCGCGGG-UCGg -5'
30690 3' -60 NC_006552.1 + 21454 0.67 0.44752
Target:  5'- gAGGCGC--GACAc--GCGcCCCAGCCc -3'
miRNA:   3'- gUCCGCGacCUGUucuCGC-GGGUCGG- -5'
30690 3' -60 NC_006552.1 + 34375 0.67 0.44752
Target:  5'- -uGGUGCcacUGGGCAu-AGCGCuCCAGCa -3'
miRNA:   3'- guCCGCG---ACCUGUucUCGCG-GGUCGg -5'
30690 3' -60 NC_006552.1 + 22011 0.67 0.410528
Target:  5'- cCAGGUGCUGGuCGuaGGCcuGCUCGGUCu -3'
miRNA:   3'- -GUCCGCGACCuGUucUCG--CGGGUCGG- -5'
30690 3' -60 NC_006552.1 + 12222 0.67 0.410528
Target:  5'- cCGGGUGCgcguuCAucGAGCGCgCAGCCu -3'
miRNA:   3'- -GUCCGCGaccu-GUu-CUCGCGgGUCGG- -5'
30690 3' -60 NC_006552.1 + 63146 0.67 0.410528
Target:  5'- aCAGGCGCUu-----GAGCGCgCCGGCg -3'
miRNA:   3'- -GUCCGCGAccuguuCUCGCG-GGUCGg -5'
30690 3' -60 NC_006552.1 + 16195 0.68 0.375496
Target:  5'- cCGGGCaaGCccgGcGGCGcGAGCGUUCAGCCg -3'
miRNA:   3'- -GUCCG--CGa--C-CUGUuCUCGCGGGUCGG- -5'
30690 3' -60 NC_006552.1 + 50891 0.68 0.367059
Target:  5'- -cGGCGC-GGGCcuGGGC-CUCGGCCu -3'
miRNA:   3'- guCCGCGaCCUGuuCUCGcGGGUCGG- -5'
30690 3' -60 NC_006552.1 + 2128 0.68 0.367059
Target:  5'- cCAGGUGCUGGGCAuGGccaaCGCCgucGCCg -3'
miRNA:   3'- -GUCCGCGACCUGUuCUc---GCGGgu-CGG- -5'
30690 3' -60 NC_006552.1 + 31776 0.69 0.318469
Target:  5'- gAGGCGCucgccgUGGACGaucaccuGGAGCuuGCCC-GCCu -3'
miRNA:   3'- gUCCGCG------ACCUGU-------UCUCG--CGGGuCGG- -5'
30690 3' -60 NC_006552.1 + 32487 0.69 0.311723
Target:  5'- -cGGCGCgGGGCcgguGGAGCGCUCgaacaGGUCg -3'
miRNA:   3'- guCCGCGaCCUGu---UCUCGCGGG-----UCGG- -5'
30690 3' -60 NC_006552.1 + 32696 0.71 0.25652
Target:  5'- --cGCGCgUGGACGgcaucacgGGAGCGCgCCaAGCCg -3'
miRNA:   3'- gucCGCG-ACCUGU--------UCUCGCG-GG-UCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.