miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30692 3' -56.3 NC_006552.1 + 2952 1.08 0.000944
Target:  5'- aGCCACGGAAUCGCGCGCCUGCUUGAAa -3'
miRNA:   3'- -CGGUGCCUUAGCGCGCGGACGAACUU- -5'
30692 3' -56.3 NC_006552.1 + 48061 0.74 0.242008
Target:  5'- gGCCACGGAuaggccaagGUCGCGCGCaUGCccGAu -3'
miRNA:   3'- -CGGUGCCU---------UAGCGCGCGgACGaaCUu -5'
30692 3' -56.3 NC_006552.1 + 13557 0.7 0.422586
Target:  5'- cGCCaggaACGG-AUCGCaCGCCUGCUgucGAAg -3'
miRNA:   3'- -CGG----UGCCuUAGCGcGCGGACGAa--CUU- -5'
30692 3' -56.3 NC_006552.1 + 32682 0.7 0.451439
Target:  5'- aUCACGGGA--GCGCGCCaagccgugcUGCUUGAc -3'
miRNA:   3'- cGGUGCCUUagCGCGCGG---------ACGAACUu -5'
30692 3' -56.3 NC_006552.1 + 7730 0.67 0.597724
Target:  5'- uGCgGCGGAggUG-GCGCCgguacggGCUUGGAa -3'
miRNA:   3'- -CGgUGCCUuaGCgCGCGGa------CGAACUU- -5'
30692 3' -56.3 NC_006552.1 + 48862 0.67 0.597724
Target:  5'- aGCCACGGGAU-GCG-GCCgGCU-GAc -3'
miRNA:   3'- -CGGUGCCUUAgCGCgCGGaCGAaCUu -5'
30692 3' -56.3 NC_006552.1 + 43356 0.67 0.608633
Target:  5'- aCCACGGcauccgauaccaGGUCGCGCGCC-GCcaGAu -3'
miRNA:   3'- cGGUGCC------------UUAGCGCGCGGaCGaaCUu -5'
30692 3' -56.3 NC_006552.1 + 40630 0.66 0.651285
Target:  5'- aGCCAUGGcaccgcuguaccaAGUCGgGCGU-UGCUUGAc -3'
miRNA:   3'- -CGGUGCC-------------UUAGCgCGCGgACGAACUu -5'
30692 3' -56.3 NC_006552.1 + 5224 0.66 0.652377
Target:  5'- cGCCcuaGCGGAuguucaccgcgAUCuGCGCGCCcUGCUguUGGGu -3'
miRNA:   3'- -CGG---UGCCU-----------UAG-CGCGCGG-ACGA--ACUU- -5'
30692 3' -56.3 NC_006552.1 + 30848 0.66 0.674178
Target:  5'- -aCGCGGAagAUCGgGUGC-UGCUUGGc -3'
miRNA:   3'- cgGUGCCU--UAGCgCGCGgACGAACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.