Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30694 | 3' | -60.8 | NC_006552.1 | + | 38288 | 0.69 | 0.301566 |
Target: 5'- --uGCCGGccagcGGCACCAGggaagucguGGCCaucagaAGCUCCu -3' miRNA: 3'- guuCGGCC-----UCGUGGUC---------CCGG------UCGAGG- -5' |
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30694 | 3' | -60.8 | NC_006552.1 | + | 49109 | 0.68 | 0.323791 |
Target: 5'- --uGCuCGGAGCGCUuuGGGGCCgccGGgaCCg -3' miRNA: 3'- guuCG-GCCUCGUGG--UCCCGG---UCgaGG- -5' |
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30694 | 3' | -60.8 | NC_006552.1 | + | 48947 | 0.68 | 0.331466 |
Target: 5'- gGAGCUgGGAGUGCCAGuGGCgCAGUugUCUc -3' miRNA: 3'- gUUCGG-CCUCGUGGUC-CCG-GUCG--AGG- -5' |
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30694 | 3' | -60.8 | NC_006552.1 | + | 38966 | 0.68 | 0.339274 |
Target: 5'- aCAGGUgGcGAaacuGCGCCGGucGGcCCAGCUCCg -3' miRNA: 3'- -GUUCGgC-CU----CGUGGUC--CC-GGUCGAGG- -5' |
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30694 | 3' | -60.8 | NC_006552.1 | + | 23381 | 0.66 | 0.475499 |
Target: 5'- --cGCCGucgcccgcacacucuGGGCAuCCAGGGUgCGGCUCg -3' miRNA: 3'- guuCGGC---------------CUCGU-GGUCCCG-GUCGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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