miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30697 3' -55.6 NC_006552.1 + 1383 0.66 0.767572
Target:  5'- aGCUUcgGCgCCCAgGCCagccaGCCGCCGGc-- -3'
miRNA:   3'- -CGAG--UG-GGGUgUGGa----UGGCGGCUuug -5'
30697 3' -55.6 NC_006552.1 + 40206 0.66 0.767572
Target:  5'- aGUUCgucagGCUCCugGCCaGCCGCuCGAcAGCg -3'
miRNA:   3'- -CGAG-----UGGGGugUGGaUGGCG-GCU-UUG- -5'
30697 3' -55.6 NC_006552.1 + 42038 0.66 0.767572
Target:  5'- cGCUCGaacaCCgGCACCagcGCCGCCa---- -3'
miRNA:   3'- -CGAGUg---GGgUGUGGa--UGGCGGcuuug -5'
30697 3' -55.6 NC_006552.1 + 38039 0.66 0.767572
Target:  5'- gGCUCaACCCCuCGCac-CCGCagCGAAACc -3'
miRNA:   3'- -CGAG-UGGGGuGUGgauGGCG--GCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 6861 0.66 0.747297
Target:  5'- -aUCACCuCCugGCCU--CGCgGggGCa -3'
miRNA:   3'- cgAGUGG-GGugUGGAugGCGgCuuUG- -5'
30697 3' -55.6 NC_006552.1 + 46858 0.66 0.747297
Target:  5'- cGCUgCACCCUggGCuGCUUGCUGaccaCGAAGCg -3'
miRNA:   3'- -CGA-GUGGGG--UG-UGGAUGGCg---GCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 41024 0.66 0.736983
Target:  5'- cUUC-CCCCgacgGCAUC--CCGCCGAAGCg -3'
miRNA:   3'- cGAGuGGGG----UGUGGauGGCGGCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 46676 0.66 0.736983
Target:  5'- aCUCACCCgAUGCCcACUGCUGcgcuACg -3'
miRNA:   3'- cGAGUGGGgUGUGGaUGGCGGCuu--UG- -5'
30697 3' -55.6 NC_006552.1 + 8630 0.66 0.726566
Target:  5'- uGCUCGCCCCguggaucauccaGCACCU-CgCGCCc---- -3'
miRNA:   3'- -CGAGUGGGG------------UGUGGAuG-GCGGcuuug -5'
30697 3' -55.6 NC_006552.1 + 9224 0.66 0.726566
Target:  5'- cGCuUCACCggCCGCGCCgaagGCCuGUCGAucAGCu -3'
miRNA:   3'- -CG-AGUGG--GGUGUGGa---UGG-CGGCU--UUG- -5'
30697 3' -55.6 NC_006552.1 + 2274 0.66 0.72552
Target:  5'- gGCUCAgCCCCugucgacUACCagaucagUGCCGCUGAcGCg -3'
miRNA:   3'- -CGAGU-GGGGu------GUGG-------AUGGCGGCUuUG- -5'
30697 3' -55.6 NC_006552.1 + 46210 0.66 0.716059
Target:  5'- cGCUCuuCCaCUACGCC-ACCGUCGGcaaaaAACa -3'
miRNA:   3'- -CGAGu-GG-GGUGUGGaUGGCGGCU-----UUG- -5'
30697 3' -55.6 NC_006552.1 + 18056 0.67 0.709714
Target:  5'- uGCUCGCCCCucuccugcuccuccCACCUcaacgugacGCUGCCGu--Ca -3'
miRNA:   3'- -CGAGUGGGGu-------------GUGGA---------UGGCGGCuuuG- -5'
30697 3' -55.6 NC_006552.1 + 51300 0.67 0.70547
Target:  5'- gGCUUGCUCCACgGCCgcCUGCUGAGc- -3'
miRNA:   3'- -CGAGUGGGGUG-UGGauGGCGGCUUug -5'
30697 3' -55.6 NC_006552.1 + 1769 0.67 0.70547
Target:  5'- --cCGCCCCAcCAUCUGCCGCaccaCGGgccAACg -3'
miRNA:   3'- cgaGUGGGGU-GUGGAUGGCG----GCU---UUG- -5'
30697 3' -55.6 NC_006552.1 + 5175 0.67 0.694811
Target:  5'- cGCUC-CCgCGcCACCUGCUGgCGuGACg -3'
miRNA:   3'- -CGAGuGGgGU-GUGGAUGGCgGCuUUG- -5'
30697 3' -55.6 NC_006552.1 + 4769 0.67 0.694811
Target:  5'- aCUCGCCCgCGCACUggaccaggcCCGCC-AGGCa -3'
miRNA:   3'- cGAGUGGG-GUGUGGau-------GGCGGcUUUG- -5'
30697 3' -55.6 NC_006552.1 + 10678 0.67 0.694811
Target:  5'- cGUUCACCCgccgcaagCGCACCU-UCGCCGcAAUc -3'
miRNA:   3'- -CGAGUGGG--------GUGUGGAuGGCGGCuUUG- -5'
30697 3' -55.6 NC_006552.1 + 12072 0.67 0.651694
Target:  5'- cGCUCugCuCUGCGa-UGCCGCCGGcAACa -3'
miRNA:   3'- -CGAGugG-GGUGUggAUGGCGGCU-UUG- -5'
30697 3' -55.6 NC_006552.1 + 1046 0.67 0.651694
Target:  5'- aGCUCGCgCCGC-CCUggcgcACgCGCCGAc-- -3'
miRNA:   3'- -CGAGUGgGGUGuGGA-----UG-GCGGCUuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.