miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30697 3' -55.6 NC_006552.1 + 1046 0.67 0.651694
Target:  5'- aGCUCGCgCCGC-CCUggcgcACgCGCCGAc-- -3'
miRNA:   3'- -CGAGUGgGGUGuGGA-----UG-GCGGCUuug -5'
30697 3' -55.6 NC_006552.1 + 1383 0.66 0.767572
Target:  5'- aGCUUcgGCgCCCAgGCCagccaGCCGCCGGc-- -3'
miRNA:   3'- -CGAG--UG-GGGUgUGGa----UGGCGGCUuug -5'
30697 3' -55.6 NC_006552.1 + 1481 0.72 0.37836
Target:  5'- --gCACUCCGCACC-AUCGCCGAGu- -3'
miRNA:   3'- cgaGUGGGGUGUGGaUGGCGGCUUug -5'
30697 3' -55.6 NC_006552.1 + 1769 0.67 0.70547
Target:  5'- --cCGCCCCAcCAUCUGCCGCaccaCGGgccAACg -3'
miRNA:   3'- cgaGUGGGGU-GUGGAUGGCG----GCU---UUG- -5'
30697 3' -55.6 NC_006552.1 + 2274 0.66 0.72552
Target:  5'- gGCUCAgCCCCugucgacUACCagaucagUGCCGCUGAcGCg -3'
miRNA:   3'- -CGAGU-GGGGu------GUGG-------AUGGCGGCUuUG- -5'
30697 3' -55.6 NC_006552.1 + 4012 0.68 0.619135
Target:  5'- cGCUCGgcaagCCUGCGCCgauaucgGCUGCUGggGCg -3'
miRNA:   3'- -CGAGUg----GGGUGUGGa------UGGCGGCuuUG- -5'
30697 3' -55.6 NC_006552.1 + 4599 1.1 0.000938
Target:  5'- uGCUCACCCCACACCUACCGCCGAAACc -3'
miRNA:   3'- -CGAGUGGGGUGUGGAUGGCGGCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 4769 0.67 0.694811
Target:  5'- aCUCGCCCgCGCACUggaccaggcCCGCC-AGGCa -3'
miRNA:   3'- cGAGUGGG-GUGUGGau-------GGCGGcUUUG- -5'
30697 3' -55.6 NC_006552.1 + 5175 0.67 0.694811
Target:  5'- cGCUC-CCgCGcCACCUGCUGgCGuGACg -3'
miRNA:   3'- -CGAGuGGgGU-GUGGAUGGCgGCuUUG- -5'
30697 3' -55.6 NC_006552.1 + 6861 0.66 0.747297
Target:  5'- -aUCACCuCCugGCCU--CGCgGggGCa -3'
miRNA:   3'- cgAGUGG-GGugUGGAugGCGgCuuUG- -5'
30697 3' -55.6 NC_006552.1 + 8630 0.66 0.726566
Target:  5'- uGCUCGCCCCguggaucauccaGCACCU-CgCGCCc---- -3'
miRNA:   3'- -CGAGUGGGG------------UGUGGAuG-GCGGcuuug -5'
30697 3' -55.6 NC_006552.1 + 9224 0.66 0.726566
Target:  5'- cGCuUCACCggCCGCGCCgaagGCCuGUCGAucAGCu -3'
miRNA:   3'- -CG-AGUGG--GGUGUGGa---UGG-CGGCU--UUG- -5'
30697 3' -55.6 NC_006552.1 + 10618 0.7 0.48197
Target:  5'- uGgaCACCgCCACGgCgaagGCCGCCGAGGa -3'
miRNA:   3'- -CgaGUGG-GGUGUgGa---UGGCGGCUUUg -5'
30697 3' -55.6 NC_006552.1 + 10678 0.67 0.694811
Target:  5'- cGUUCACCCgccgcaagCGCACCU-UCGCCGcAAUc -3'
miRNA:   3'- -CGAGUGGG--------GUGUGGAuGGCGGCuUUG- -5'
30697 3' -55.6 NC_006552.1 + 11743 0.7 0.521909
Target:  5'- cGCUU-CCCCGCAacaagCUGCCgaccuugGCCGAGGCa -3'
miRNA:   3'- -CGAGuGGGGUGUg----GAUGG-------CGGCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 12072 0.67 0.651694
Target:  5'- cGCUCugCuCUGCGa-UGCCGCCGGcAACa -3'
miRNA:   3'- -CGAGugG-GGUGUggAUGGCGGCU-UUG- -5'
30697 3' -55.6 NC_006552.1 + 12255 0.69 0.565203
Target:  5'- cGCcUGCgCCgGCGCCcGCCGCCGguGCg -3'
miRNA:   3'- -CGaGUG-GGgUGUGGaUGGCGGCuuUG- -5'
30697 3' -55.6 NC_006552.1 + 12875 0.72 0.405125
Target:  5'- aGC-CACCUCGCGCCgGCCacGCCGgcACa -3'
miRNA:   3'- -CGaGUGGGGUGUGGaUGG--CGGCuuUG- -5'
30697 3' -55.6 NC_006552.1 + 13026 0.69 0.53341
Target:  5'- cGCUCAUCgC-CGCC-AUCGCCGAAGg -3'
miRNA:   3'- -CGAGUGGgGuGUGGaUGGCGGCUUUg -5'
30697 3' -55.6 NC_006552.1 + 13563 0.68 0.627818
Target:  5'- cGCgagCGCCaggaacggaucgCACGCCUGCUGUCGAAGg -3'
miRNA:   3'- -CGa--GUGGg-----------GUGUGGAUGGCGGCUUUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.