Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30697 | 3' | -55.6 | NC_006552.1 | + | 1046 | 0.67 | 0.651694 |
Target: 5'- aGCUCGCgCCGC-CCUggcgcACgCGCCGAc-- -3' miRNA: 3'- -CGAGUGgGGUGuGGA-----UG-GCGGCUuug -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 1383 | 0.66 | 0.767572 |
Target: 5'- aGCUUcgGCgCCCAgGCCagccaGCCGCCGGc-- -3' miRNA: 3'- -CGAG--UG-GGGUgUGGa----UGGCGGCUuug -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 1481 | 0.72 | 0.37836 |
Target: 5'- --gCACUCCGCACC-AUCGCCGAGu- -3' miRNA: 3'- cgaGUGGGGUGUGGaUGGCGGCUUug -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 1769 | 0.67 | 0.70547 |
Target: 5'- --cCGCCCCAcCAUCUGCCGCaccaCGGgccAACg -3' miRNA: 3'- cgaGUGGGGU-GUGGAUGGCG----GCU---UUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 2274 | 0.66 | 0.72552 |
Target: 5'- gGCUCAgCCCCugucgacUACCagaucagUGCCGCUGAcGCg -3' miRNA: 3'- -CGAGU-GGGGu------GUGG-------AUGGCGGCUuUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 4012 | 0.68 | 0.619135 |
Target: 5'- cGCUCGgcaagCCUGCGCCgauaucgGCUGCUGggGCg -3' miRNA: 3'- -CGAGUg----GGGUGUGGa------UGGCGGCuuUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 4599 | 1.1 | 0.000938 |
Target: 5'- uGCUCACCCCACACCUACCGCCGAAACc -3' miRNA: 3'- -CGAGUGGGGUGUGGAUGGCGGCUUUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 4769 | 0.67 | 0.694811 |
Target: 5'- aCUCGCCCgCGCACUggaccaggcCCGCC-AGGCa -3' miRNA: 3'- cGAGUGGG-GUGUGGau-------GGCGGcUUUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 5175 | 0.67 | 0.694811 |
Target: 5'- cGCUC-CCgCGcCACCUGCUGgCGuGACg -3' miRNA: 3'- -CGAGuGGgGU-GUGGAUGGCgGCuUUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 6861 | 0.66 | 0.747297 |
Target: 5'- -aUCACCuCCugGCCU--CGCgGggGCa -3' miRNA: 3'- cgAGUGG-GGugUGGAugGCGgCuuUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 8630 | 0.66 | 0.726566 |
Target: 5'- uGCUCGCCCCguggaucauccaGCACCU-CgCGCCc---- -3' miRNA: 3'- -CGAGUGGGG------------UGUGGAuG-GCGGcuuug -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 9224 | 0.66 | 0.726566 |
Target: 5'- cGCuUCACCggCCGCGCCgaagGCCuGUCGAucAGCu -3' miRNA: 3'- -CG-AGUGG--GGUGUGGa---UGG-CGGCU--UUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 10618 | 0.7 | 0.48197 |
Target: 5'- uGgaCACCgCCACGgCgaagGCCGCCGAGGa -3' miRNA: 3'- -CgaGUGG-GGUGUgGa---UGGCGGCUUUg -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 10678 | 0.67 | 0.694811 |
Target: 5'- cGUUCACCCgccgcaagCGCACCU-UCGCCGcAAUc -3' miRNA: 3'- -CGAGUGGG--------GUGUGGAuGGCGGCuUUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 11743 | 0.7 | 0.521909 |
Target: 5'- cGCUU-CCCCGCAacaagCUGCCgaccuugGCCGAGGCa -3' miRNA: 3'- -CGAGuGGGGUGUg----GAUGG-------CGGCUUUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 12072 | 0.67 | 0.651694 |
Target: 5'- cGCUCugCuCUGCGa-UGCCGCCGGcAACa -3' miRNA: 3'- -CGAGugG-GGUGUggAUGGCGGCU-UUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 12255 | 0.69 | 0.565203 |
Target: 5'- cGCcUGCgCCgGCGCCcGCCGCCGguGCg -3' miRNA: 3'- -CGaGUG-GGgUGUGGaUGGCGGCuuUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 12875 | 0.72 | 0.405125 |
Target: 5'- aGC-CACCUCGCGCCgGCCacGCCGgcACa -3' miRNA: 3'- -CGaGUGGGGUGUGGaUGG--CGGCuuUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 13026 | 0.69 | 0.53341 |
Target: 5'- cGCUCAUCgC-CGCC-AUCGCCGAAGg -3' miRNA: 3'- -CGAGUGGgGuGUGGaUGGCGGCUUUg -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 13563 | 0.68 | 0.627818 |
Target: 5'- cGCgagCGCCaggaacggaucgCACGCCUGCUGUCGAAGg -3' miRNA: 3'- -CGa--GUGGg-----------GUGUGGAUGGCGGCUUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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