miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30697 3' -55.6 NC_006552.1 + 60401 0.73 0.361188
Target:  5'- aCUacaGCCCC-CACCUGCgGCgGggGCg -3'
miRNA:   3'- cGAg--UGGGGuGUGGAUGgCGgCuuUG- -5'
30697 3' -55.6 NC_006552.1 + 57633 0.75 0.263133
Target:  5'- aGUUCGCCCUGCGCCUGCgggaUGCCGuucACa -3'
miRNA:   3'- -CGAGUGGGGUGUGGAUG----GCGGCuu-UG- -5'
30697 3' -55.6 NC_006552.1 + 56989 0.75 0.256561
Target:  5'- aGUUC-CUUCACAuCCUcGCCGCCGAAGCg -3'
miRNA:   3'- -CGAGuGGGGUGU-GGA-UGGCGGCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 56043 0.68 0.640845
Target:  5'- -gUCACCCUGCGCgUaGCCGCuCGcgGCa -3'
miRNA:   3'- cgAGUGGGGUGUGgA-UGGCG-GCuuUG- -5'
30697 3' -55.6 NC_006552.1 + 55898 0.69 0.554543
Target:  5'- gGCUCGCCcucggcguccaCCAC-CCUGCuguCGCCGAAccaGCg -3'
miRNA:   3'- -CGAGUGG-----------GGUGuGGAUG---GCGGCUU---UG- -5'
30697 3' -55.6 NC_006552.1 + 51300 0.67 0.70547
Target:  5'- gGCUUGCUCCACgGCCgcCUGCUGAGc- -3'
miRNA:   3'- -CGAGUGGGGUG-UGGauGGCGGCUUug -5'
30697 3' -55.6 NC_006552.1 + 49118 0.69 0.572697
Target:  5'- ---aGCCCCAuCugCUcggagcgcuuugggGCCGCCGGGACc -3'
miRNA:   3'- cgagUGGGGU-GugGA--------------UGGCGGCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 46858 0.66 0.747297
Target:  5'- cGCUgCACCCUggGCuGCUUGCUGaccaCGAAGCg -3'
miRNA:   3'- -CGA-GUGGGG--UG-UGGAUGGCg---GCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 46717 0.67 0.651694
Target:  5'- cGCaagCGCCCCACGCa---CGCCGGu-- -3'
miRNA:   3'- -CGa--GUGGGGUGUGgaugGCGGCUuug -5'
30697 3' -55.6 NC_006552.1 + 46676 0.66 0.736983
Target:  5'- aCUCACCCgAUGCCcACUGCUGcgcuACg -3'
miRNA:   3'- cGAGUGGGgUGUGGaUGGCGGCuu--UG- -5'
30697 3' -55.6 NC_006552.1 + 46210 0.66 0.716059
Target:  5'- cGCUCuuCCaCUACGCC-ACCGUCGGcaaaaAACa -3'
miRNA:   3'- -CGAGu-GG-GGUGUGGaUGGCGGCU-----UUG- -5'
30697 3' -55.6 NC_006552.1 + 44653 0.72 0.396071
Target:  5'- uGCUCGCgCaCCACAUCUACCuGCCuggcGAGCa -3'
miRNA:   3'- -CGAGUG-G-GGUGUGGAUGG-CGGc---UUUG- -5'
30697 3' -55.6 NC_006552.1 + 43204 0.68 0.629989
Target:  5'- uGCagCGCCCCAguCGCCUgAUCGCUGAcgguGGCg -3'
miRNA:   3'- -CGa-GUGGGGU--GUGGA-UGGCGGCU----UUG- -5'
30697 3' -55.6 NC_006552.1 + 42852 0.72 0.396071
Target:  5'- cCUCAUCCgACACC-GCCGCCGuauCg -3'
miRNA:   3'- cGAGUGGGgUGUGGaUGGCGGCuuuG- -5'
30697 3' -55.6 NC_006552.1 + 42402 0.71 0.462068
Target:  5'- ---aGCCUgGCGCCUcGCCGCCGAuaauGACg -3'
miRNA:   3'- cgagUGGGgUGUGGA-UGGCGGCU----UUG- -5'
30697 3' -55.6 NC_006552.1 + 42038 0.66 0.767572
Target:  5'- cGCUCGaacaCCgGCACCagcGCCGCCa---- -3'
miRNA:   3'- -CGAGUg---GGgUGUGGa--UGGCGGcuuug -5'
30697 3' -55.6 NC_006552.1 + 41024 0.66 0.736983
Target:  5'- cUUC-CCCCgacgGCAUC--CCGCCGAAGCg -3'
miRNA:   3'- cGAGuGGGG----UGUGGauGGCGGCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 40206 0.66 0.767572
Target:  5'- aGUUCgucagGCUCCugGCCaGCCGCuCGAcAGCg -3'
miRNA:   3'- -CGAG-----UGGGGugUGGaUGGCG-GCU-UUG- -5'
30697 3' -55.6 NC_006552.1 + 38039 0.66 0.767572
Target:  5'- gGCUCaACCCCuCGCac-CCGCagCGAAACc -3'
miRNA:   3'- -CGAG-UGGGGuGUGgauGGCG--GCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 36041 0.77 0.208734
Target:  5'- uGC-CGuCCCCAUGCCUGgCGCUGGAACa -3'
miRNA:   3'- -CGaGU-GGGGUGUGGAUgGCGGCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.