miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30697 3' -55.6 NC_006552.1 + 40206 0.66 0.767572
Target:  5'- aGUUCgucagGCUCCugGCCaGCCGCuCGAcAGCg -3'
miRNA:   3'- -CGAG-----UGGGGugUGGaUGGCG-GCU-UUG- -5'
30697 3' -55.6 NC_006552.1 + 1383 0.66 0.767572
Target:  5'- aGCUUcgGCgCCCAgGCCagccaGCCGCCGGc-- -3'
miRNA:   3'- -CGAG--UG-GGGUgUGGa----UGGCGGCUuug -5'
30697 3' -55.6 NC_006552.1 + 42038 0.66 0.767572
Target:  5'- cGCUCGaacaCCgGCACCagcGCCGCCa---- -3'
miRNA:   3'- -CGAGUg---GGgUGUGGa--UGGCGGcuuug -5'
30697 3' -55.6 NC_006552.1 + 38039 0.66 0.767572
Target:  5'- gGCUCaACCCCuCGCac-CCGCagCGAAACc -3'
miRNA:   3'- -CGAG-UGGGGuGUGgauGGCG--GCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 11743 0.7 0.521909
Target:  5'- cGCUU-CCCCGCAacaagCUGCCgaccuugGCCGAGGCa -3'
miRNA:   3'- -CGAGuGGGGUGUg----GAUGG-------CGGCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 36041 0.77 0.208734
Target:  5'- uGC-CGuCCCCAUGCCUGgCGCUGGAACa -3'
miRNA:   3'- -CGaGU-GGGGUGUGGAUgGCGGCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 56989 0.75 0.256561
Target:  5'- aGUUC-CUUCACAuCCUcGCCGCCGAAGCg -3'
miRNA:   3'- -CGAGuGGGGUGU-GGA-UGGCGGCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 57633 0.75 0.263133
Target:  5'- aGUUCGCCCUGCGCCUGCgggaUGCCGuucACa -3'
miRNA:   3'- -CGAGUGGGGUGUGGAUG----GCGGCuu-UG- -5'
30697 3' -55.6 NC_006552.1 + 60401 0.73 0.361188
Target:  5'- aCUacaGCCCC-CACCUGCgGCgGggGCg -3'
miRNA:   3'- cGAg--UGGGGuGUGGAUGgCGgCuuUG- -5'
30697 3' -55.6 NC_006552.1 + 1481 0.72 0.37836
Target:  5'- --gCACUCCGCACC-AUCGCCGAGu- -3'
miRNA:   3'- cgaGUGGGGUGUGGaUGGCGGCUUug -5'
30697 3' -55.6 NC_006552.1 + 44653 0.72 0.396071
Target:  5'- uGCUCGCgCaCCACAUCUACCuGCCuggcGAGCa -3'
miRNA:   3'- -CGAGUG-G-GGUGUGGAUGG-CGGc---UUUG- -5'
30697 3' -55.6 NC_006552.1 + 42852 0.72 0.396071
Target:  5'- cCUCAUCCgACACC-GCCGCCGuauCg -3'
miRNA:   3'- cGAGUGGGgUGUGGaUGGCGGCuuuG- -5'
30697 3' -55.6 NC_006552.1 + 12875 0.72 0.405125
Target:  5'- aGC-CACCUCGCGCCgGCCacGCCGgcACa -3'
miRNA:   3'- -CGaGUGGGGUGUGGaUGG--CGGCuuUG- -5'
30697 3' -55.6 NC_006552.1 + 26006 0.72 0.405125
Target:  5'- gGCUgGCCCCAcCAUgUGCUGCCGu-ACu -3'
miRNA:   3'- -CGAgUGGGGU-GUGgAUGGCGGCuuUG- -5'
30697 3' -55.6 NC_006552.1 + 42402 0.71 0.462068
Target:  5'- ---aGCCUgGCGCCUcGCCGCCGAuaauGACg -3'
miRNA:   3'- cgagUGGGgUGUGGA-UGGCGGCU----UUG- -5'
30697 3' -55.6 NC_006552.1 + 10618 0.7 0.48197
Target:  5'- uGgaCACCgCCACGgCgaagGCCGCCGAGGa -3'
miRNA:   3'- -CgaGUGG-GGUGUgGa---UGGCGGCUUUg -5'
30697 3' -55.6 NC_006552.1 + 4599 1.1 0.000938
Target:  5'- uGCUCACCCCACACCUACCGCCGAAACc -3'
miRNA:   3'- -CGAGUGGGGUGUGGAUGGCGGCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 13026 0.69 0.53341
Target:  5'- cGCUCAUCgC-CGCC-AUCGCCGAAGg -3'
miRNA:   3'- -CGAGUGGgGuGUGGaUGGCGGCUUUg -5'
30697 3' -55.6 NC_006552.1 + 55898 0.69 0.554543
Target:  5'- gGCUCGCCcucggcguccaCCAC-CCUGCuguCGCCGAAccaGCg -3'
miRNA:   3'- -CGAGUGG-----------GGUGuGGAUG---GCGGCUU---UG- -5'
30697 3' -55.6 NC_006552.1 + 12255 0.69 0.565203
Target:  5'- cGCcUGCgCCgGCGCCcGCCGCCGguGCg -3'
miRNA:   3'- -CGaGUG-GGgUGUGGaUGGCGGCuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.