miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30697 3' -55.6 NC_006552.1 + 18056 0.67 0.709714
Target:  5'- uGCUCGCCCCucuccugcuccuccCACCUcaacgugacGCUGCCGu--Ca -3'
miRNA:   3'- -CGAGUGGGGu-------------GUGGA---------UGGCGGCuuuG- -5'
30697 3' -55.6 NC_006552.1 + 56043 0.68 0.640845
Target:  5'- -gUCACCCUGCGCgUaGCCGCuCGcgGCa -3'
miRNA:   3'- cgAGUGGGGUGUGgA-UGGCG-GCuuUG- -5'
30697 3' -55.6 NC_006552.1 + 25772 0.68 0.629989
Target:  5'- --aUACCgCACGCgauCUGCgGCCGGAACg -3'
miRNA:   3'- cgaGUGGgGUGUG---GAUGgCGGCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 13932 0.68 0.629989
Target:  5'- aGCUUucCCCCGCuCCUACCaGCCccgaGGAAUg -3'
miRNA:   3'- -CGAGu-GGGGUGuGGAUGG-CGG----CUUUG- -5'
30697 3' -55.6 NC_006552.1 + 43204 0.68 0.629989
Target:  5'- uGCagCGCCCCAguCGCCUgAUCGCUGAcgguGGCg -3'
miRNA:   3'- -CGa-GUGGGGU--GUGGA-UGGCGGCU----UUG- -5'
30697 3' -55.6 NC_006552.1 + 13563 0.68 0.627818
Target:  5'- cGCgagCGCCaggaacggaucgCACGCCUGCUGUCGAAGg -3'
miRNA:   3'- -CGa--GUGGg-----------GUGUGGAUGGCGGCUUUg -5'
30697 3' -55.6 NC_006552.1 + 4012 0.68 0.619135
Target:  5'- cGCUCGgcaagCCUGCGCCgauaucgGCUGCUGggGCg -3'
miRNA:   3'- -CGAGUg----GGGUGUGGa------UGGCGGCuuUG- -5'
30697 3' -55.6 NC_006552.1 + 29127 0.68 0.640845
Target:  5'- uCUUGCCCUguugguCGCC-ACCaGCCGAAGCg -3'
miRNA:   3'- cGAGUGGGGu-----GUGGaUGG-CGGCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 13026 0.69 0.53341
Target:  5'- cGCUCAUCgC-CGCC-AUCGCCGAAGg -3'
miRNA:   3'- -CGAGUGGgGuGUGGaUGGCGGCUUUg -5'
30697 3' -55.6 NC_006552.1 + 55898 0.69 0.554543
Target:  5'- gGCUCGCCcucggcguccaCCAC-CCUGCuguCGCCGAAccaGCg -3'
miRNA:   3'- -CGAGUGG-----------GGUGuGGAUG---GCGGCUU---UG- -5'
30697 3' -55.6 NC_006552.1 + 49118 0.69 0.572697
Target:  5'- ---aGCCCCAuCugCUcggagcgcuuugggGCCGCCGGGACc -3'
miRNA:   3'- cgagUGGGGU-GugGA--------------UGGCGGCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 18666 0.69 0.575915
Target:  5'- cUUCAgCCCGCGCCUgGCCGagGAGAUa -3'
miRNA:   3'- cGAGUgGGGUGUGGA-UGGCggCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 27548 0.69 0.586673
Target:  5'- cGCUCucuGCCuCCGCuuCUGCUGCCGGc-- -3'
miRNA:   3'- -CGAG---UGG-GGUGugGAUGGCGGCUuug -5'
30697 3' -55.6 NC_006552.1 + 12255 0.69 0.565203
Target:  5'- cGCcUGCgCCgGCGCCcGCCGCCGguGCg -3'
miRNA:   3'- -CGaGUG-GGgUGUGGaUGGCGGCuuUG- -5'
30697 3' -55.6 NC_006552.1 + 10618 0.7 0.48197
Target:  5'- uGgaCACCgCCACGgCgaagGCCGCCGAGGa -3'
miRNA:   3'- -CgaGUGG-GGUGUgGa---UGGCGGCUUUg -5'
30697 3' -55.6 NC_006552.1 + 11743 0.7 0.521909
Target:  5'- cGCUU-CCCCGCAacaagCUGCCgaccuugGCCGAGGCa -3'
miRNA:   3'- -CGAGuGGGGUGUg----GAUGG-------CGGCUUUG- -5'
30697 3' -55.6 NC_006552.1 + 42402 0.71 0.462068
Target:  5'- ---aGCCUgGCGCCUcGCCGCCGAuaauGACg -3'
miRNA:   3'- cgagUGGGgUGUGGA-UGGCGGCU----UUG- -5'
30697 3' -55.6 NC_006552.1 + 1481 0.72 0.37836
Target:  5'- --gCACUCCGCACC-AUCGCCGAGu- -3'
miRNA:   3'- cgaGUGGGGUGUGGaUGGCGGCUUug -5'
30697 3' -55.6 NC_006552.1 + 26006 0.72 0.405125
Target:  5'- gGCUgGCCCCAcCAUgUGCUGCCGu-ACu -3'
miRNA:   3'- -CGAgUGGGGU-GUGgAUGGCGGCuuUG- -5'
30697 3' -55.6 NC_006552.1 + 12875 0.72 0.405125
Target:  5'- aGC-CACCUCGCGCCgGCCacGCCGgcACa -3'
miRNA:   3'- -CGaGUGGGGUGUGGaUGG--CGGCuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.