Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 30697 | 3' | -55.6 | NC_006552.1 | + | 44653 | 0.72 | 0.396071 |
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Target: 5'- uGCUCGCgCaCCACAUCUACCuGCCuggcGAGCa -3' miRNA: 3'- -CGAGUG-G-GGUGUGGAUGG-CGGc---UUUG- -5' |
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| 30697 | 3' | -55.6 | NC_006552.1 | + | 1481 | 0.72 | 0.37836 |
|
Target: 5'- --gCACUCCGCACC-AUCGCCGAGu- -3' miRNA: 3'- cgaGUGGGGUGUGGaUGGCGGCUUug -5' |
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| 30697 | 3' | -55.6 | NC_006552.1 | + | 60401 | 0.73 | 0.361188 |
|
Target: 5'- aCUacaGCCCC-CACCUGCgGCgGggGCg -3' miRNA: 3'- cGAg--UGGGGuGUGGAUGgCGgCuuUG- -5' |
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| 30697 | 3' | -55.6 | NC_006552.1 | + | 57633 | 0.75 | 0.263133 |
|
Target: 5'- aGUUCGCCCUGCGCCUGCgggaUGCCGuucACa -3' miRNA: 3'- -CGAGUGGGGUGUGGAUG----GCGGCuu-UG- -5' |
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| 30697 | 3' | -55.6 | NC_006552.1 | + | 56989 | 0.75 | 0.256561 |
|
Target: 5'- aGUUC-CUUCACAuCCUcGCCGCCGAAGCg -3' miRNA: 3'- -CGAGuGGGGUGU-GGA-UGGCGGCUUUG- -5' |
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| 30697 | 3' | -55.6 | NC_006552.1 | + | 36041 | 0.77 | 0.208734 |
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Target: 5'- uGC-CGuCCCCAUGCCUGgCGCUGGAACa -3' miRNA: 3'- -CGaGU-GGGGUGUGGAUgGCGGCUUUG- -5' |
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| 30697 | 3' | -55.6 | NC_006552.1 | + | 4599 | 1.1 | 0.000938 |
|
Target: 5'- uGCUCACCCCACACCUACCGCCGAAACc -3' miRNA: 3'- -CGAGUGGGGUGUGGAUGGCGGCUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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