Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30697 | 3' | -55.6 | NC_006552.1 | + | 41024 | 0.66 | 0.736983 |
Target: 5'- cUUC-CCCCgacgGCAUC--CCGCCGAAGCg -3' miRNA: 3'- cGAGuGGGG----UGUGGauGGCGGCUUUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 6861 | 0.66 | 0.747297 |
Target: 5'- -aUCACCuCCugGCCU--CGCgGggGCa -3' miRNA: 3'- cgAGUGG-GGugUGGAugGCGgCuuUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 46858 | 0.66 | 0.747297 |
Target: 5'- cGCUgCACCCUggGCuGCUUGCUGaccaCGAAGCg -3' miRNA: 3'- -CGA-GUGGGG--UG-UGGAUGGCg---GCUUUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 40206 | 0.66 | 0.767572 |
Target: 5'- aGUUCgucagGCUCCugGCCaGCCGCuCGAcAGCg -3' miRNA: 3'- -CGAG-----UGGGGugUGGaUGGCG-GCU-UUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 1383 | 0.66 | 0.767572 |
Target: 5'- aGCUUcgGCgCCCAgGCCagccaGCCGCCGGc-- -3' miRNA: 3'- -CGAG--UG-GGGUgUGGa----UGGCGGCUuug -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 42038 | 0.66 | 0.767572 |
Target: 5'- cGCUCGaacaCCgGCACCagcGCCGCCa---- -3' miRNA: 3'- -CGAGUg---GGgUGUGGa--UGGCGGcuuug -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 38039 | 0.66 | 0.767572 |
Target: 5'- gGCUCaACCCCuCGCac-CCGCagCGAAACc -3' miRNA: 3'- -CGAG-UGGGGuGUGgauGGCG--GCUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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