Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30697 | 3' | -55.6 | NC_006552.1 | + | 49118 | 0.69 | 0.572697 |
Target: 5'- ---aGCCCCAuCugCUcggagcgcuuugggGCCGCCGGGACc -3' miRNA: 3'- cgagUGGGGU-GugGA--------------UGGCGGCUUUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 51300 | 0.67 | 0.70547 |
Target: 5'- gGCUUGCUCCACgGCCgcCUGCUGAGc- -3' miRNA: 3'- -CGAGUGGGGUG-UGGauGGCGGCUUug -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 55898 | 0.69 | 0.554543 |
Target: 5'- gGCUCGCCcucggcguccaCCAC-CCUGCuguCGCCGAAccaGCg -3' miRNA: 3'- -CGAGUGG-----------GGUGuGGAUG---GCGGCUU---UG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 56043 | 0.68 | 0.640845 |
Target: 5'- -gUCACCCUGCGCgUaGCCGCuCGcgGCa -3' miRNA: 3'- cgAGUGGGGUGUGgA-UGGCG-GCuuUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 56989 | 0.75 | 0.256561 |
Target: 5'- aGUUC-CUUCACAuCCUcGCCGCCGAAGCg -3' miRNA: 3'- -CGAGuGGGGUGU-GGA-UGGCGGCUUUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 57633 | 0.75 | 0.263133 |
Target: 5'- aGUUCGCCCUGCGCCUGCgggaUGCCGuucACa -3' miRNA: 3'- -CGAGUGGGGUGUGGAUG----GCGGCuu-UG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 60401 | 0.73 | 0.361188 |
Target: 5'- aCUacaGCCCC-CACCUGCgGCgGggGCg -3' miRNA: 3'- cGAg--UGGGGuGUGGAUGgCGgCuuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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