Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30697 | 3' | -55.6 | NC_006552.1 | + | 41024 | 0.66 | 0.736983 |
Target: 5'- cUUC-CCCCgacgGCAUC--CCGCCGAAGCg -3' miRNA: 3'- cGAGuGGGG----UGUGGauGGCGGCUUUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 46676 | 0.66 | 0.736983 |
Target: 5'- aCUCACCCgAUGCCcACUGCUGcgcuACg -3' miRNA: 3'- cGAGUGGGgUGUGGaUGGCGGCuu--UG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 8630 | 0.66 | 0.726566 |
Target: 5'- uGCUCGCCCCguggaucauccaGCACCU-CgCGCCc---- -3' miRNA: 3'- -CGAGUGGGG------------UGUGGAuG-GCGGcuuug -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 9224 | 0.66 | 0.726566 |
Target: 5'- cGCuUCACCggCCGCGCCgaagGCCuGUCGAucAGCu -3' miRNA: 3'- -CG-AGUGG--GGUGUGGa---UGG-CGGCU--UUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 2274 | 0.66 | 0.72552 |
Target: 5'- gGCUCAgCCCCugucgacUACCagaucagUGCCGCUGAcGCg -3' miRNA: 3'- -CGAGU-GGGGu------GUGG-------AUGGCGGCUuUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 46210 | 0.66 | 0.716059 |
Target: 5'- cGCUCuuCCaCUACGCC-ACCGUCGGcaaaaAACa -3' miRNA: 3'- -CGAGu-GG-GGUGUGGaUGGCGGCU-----UUG- -5' |
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30697 | 3' | -55.6 | NC_006552.1 | + | 38039 | 0.66 | 0.767572 |
Target: 5'- gGCUCaACCCCuCGCac-CCGCagCGAAACc -3' miRNA: 3'- -CGAG-UGGGGuGUGgauGGCG--GCUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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