miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30698 5' -62.1 NC_006552.1 + 29012 0.68 0.314843
Target:  5'- ---aGCAuCGCCGGCACccgCGUCgGCuGCg -3'
miRNA:   3'- augaCGU-GCGGCCGUGa--GCGGgCG-CG- -5'
30698 5' -62.1 NC_006552.1 + 49694 0.68 0.314843
Target:  5'- cUGCUGCGCGUCaGC-CUUGCCUuGgGCc -3'
miRNA:   3'- -AUGACGUGCGGcCGuGAGCGGG-CgCG- -5'
30698 5' -62.1 NC_006552.1 + 8459 0.68 0.314843
Target:  5'- aACUGCGCcagGCCcuGGCGCUuaccccguuUGCCCGUGa -3'
miRNA:   3'- aUGACGUG---CGG--CCGUGA---------GCGGGCGCg -5'
30698 5' -62.1 NC_006552.1 + 44506 0.67 0.321536
Target:  5'- --aUGgGCGCCGGCAgUCcugugccGCCCGC-Ca -3'
miRNA:   3'- augACgUGCGGCCGUgAG-------CGGGCGcG- -5'
30698 5' -62.1 NC_006552.1 + 31785 0.67 0.329861
Target:  5'- gACUGCGCcgaGGCGCUCG-CCGUGg -3'
miRNA:   3'- aUGACGUGcggCCGUGAGCgGGCGCg -5'
30698 5' -62.1 NC_006552.1 + 50437 0.67 0.337566
Target:  5'- cUGCgGCAUGUCGGCGCgagggaUGCCCacgGUGCc -3'
miRNA:   3'- -AUGaCGUGCGGCCGUGa-----GCGGG---CGCG- -5'
30698 5' -62.1 NC_006552.1 + 37050 0.67 0.337566
Target:  5'- uUACUGC-CGuCCGGCGCcaccggaCGCCauugcagGCGCa -3'
miRNA:   3'- -AUGACGuGC-GGCCGUGa------GCGGg------CGCG- -5'
30698 5' -62.1 NC_006552.1 + 21016 0.67 0.348571
Target:  5'- cGCgGCGCGCCGacgguccaugucuucGCGCUCG-UgGCGCa -3'
miRNA:   3'- aUGaCGUGCGGC---------------CGUGAGCgGgCGCG- -5'
30698 5' -62.1 NC_006552.1 + 20785 0.67 0.353366
Target:  5'- gAUUGCGCuGCCGGCcggcgaaaccgGCUCGaguaCGUGCu -3'
miRNA:   3'- aUGACGUG-CGGCCG-----------UGAGCgg--GCGCG- -5'
30698 5' -62.1 NC_006552.1 + 4937 0.67 0.361459
Target:  5'- gGCcGCGCGCgGGCuuUCcCgCCGCGCc -3'
miRNA:   3'- aUGaCGUGCGgCCGugAGcG-GGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 11669 0.66 0.369681
Target:  5'- cACcGCGCgauGCCGGaCGCccaaGCCUGCGCc -3'
miRNA:   3'- aUGaCGUG---CGGCC-GUGag--CGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 4309 0.66 0.37803
Target:  5'- gUGCgGCGCaCCGGCGCUgGCauauCGgGCg -3'
miRNA:   3'- -AUGaCGUGcGGCCGUGAgCGg---GCgCG- -5'
30698 5' -62.1 NC_006552.1 + 38793 0.66 0.37803
Target:  5'- ---aGCGCGCCGGCA-UCGgucacuUCCGCGa -3'
miRNA:   3'- augaCGUGCGGCCGUgAGC------GGGCGCg -5'
30698 5' -62.1 NC_006552.1 + 53622 0.66 0.37803
Target:  5'- uUGCUGCcacuGCGCCGGCcCaggGCCUGCa- -3'
miRNA:   3'- -AUGACG----UGCGGCCGuGag-CGGGCGcg -5'
30698 5' -62.1 NC_006552.1 + 31076 0.66 0.385651
Target:  5'- aACgGCAUGCCGGaguGCUCggaugccgcccagGCuuGCGCc -3'
miRNA:   3'- aUGaCGUGCGGCCg--UGAG-------------CGggCGCG- -5'
30698 5' -62.1 NC_006552.1 + 19415 0.66 0.386504
Target:  5'- aGCgGUACGCCGuGUccgGCUUGUCCGUcaGCa -3'
miRNA:   3'- aUGaCGUGCGGC-CG---UGAGCGGGCG--CG- -5'
30698 5' -62.1 NC_006552.1 + 55451 0.66 0.386504
Target:  5'- ---aGCaugGCGCCGGCcuGCugaucaaucuUCGCCCGCuGCu -3'
miRNA:   3'- augaCG---UGCGGCCG--UG----------AGCGGGCG-CG- -5'
30698 5' -62.1 NC_006552.1 + 32552 0.66 0.402947
Target:  5'- uUGCgaGCGCGCUccugcugGGCcuGCUgaGCCUGCGCg -3'
miRNA:   3'- -AUGa-CGUGCGG-------CCG--UGAg-CGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 13971 0.66 0.403825
Target:  5'- aGCUGCGCgugaaugaaGCCGcCGaugagCGCCUGCGCc -3'
miRNA:   3'- aUGACGUG---------CGGCcGUga---GCGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 126 0.66 0.403825
Target:  5'- gUACUGCAaCGgaacCUGGaCGC-CGCCgGCGCc -3'
miRNA:   3'- -AUGACGU-GC----GGCC-GUGaGCGGgCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.