miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30698 5' -62.1 NC_006552.1 + 32315 0.74 0.108025
Target:  5'- aGCauggGCACGCCGuCGCUCGCCaucuGCGCc -3'
miRNA:   3'- aUGa---CGUGCGGCcGUGAGCGGg---CGCG- -5'
30698 5' -62.1 NC_006552.1 + 59765 0.75 0.102361
Target:  5'- gGCUGCGCGCCaGUugUuCGC-CGCGCu -3'
miRNA:   3'- aUGACGUGCGGcCGugA-GCGgGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 39039 0.77 0.066906
Target:  5'- cGCaGCACGuuGGCGCgcgcgaucagcagaCGCCCGCGCc -3'
miRNA:   3'- aUGaCGUGCggCCGUGa-------------GCGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 20728 0.78 0.056076
Target:  5'- cGCUGCcgGCGCCGGCAgaCGCCCcagGCGUu -3'
miRNA:   3'- aUGACG--UGCGGCCGUgaGCGGG---CGCG- -5'
30698 5' -62.1 NC_006552.1 + 16700 0.8 0.039069
Target:  5'- cACUGCGaGCCGGC-CUgaGCCCGCGCg -3'
miRNA:   3'- aUGACGUgCGGCCGuGAg-CGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 51578 0.72 0.164988
Target:  5'- cGCUGCGCcuuGUCGGCACggGCCUGCucgGCg -3'
miRNA:   3'- aUGACGUG---CGGCCGUGagCGGGCG---CG- -5'
30698 5' -62.1 NC_006552.1 + 50497 0.72 0.17109
Target:  5'- aUGCUGCACGCCacgaGCGCucaggaaguucaccaUCGCgCCGCGg -3'
miRNA:   3'- -AUGACGUGCGGc---CGUG---------------AGCG-GGCGCg -5'
30698 5' -62.1 NC_006552.1 + 4021 0.69 0.26638
Target:  5'- aUGCgacCACGCuCGGCAa--GCCUGCGCc -3'
miRNA:   3'- -AUGac-GUGCG-GCCGUgagCGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 5200 0.69 0.259971
Target:  5'- -uCUGCGCGCCcuGCugUUGgguaaccgcuCCCGCGCc -3'
miRNA:   3'- auGACGUGCGGc-CGugAGC----------GGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 29333 0.69 0.259971
Target:  5'- -cCUGCgACGUCGGgGcCUCGCCUGcCGUg -3'
miRNA:   3'- auGACG-UGCGGCCgU-GAGCGGGC-GCG- -5'
30698 5' -62.1 NC_006552.1 + 16102 0.69 0.259337
Target:  5'- cUGgUGC-CGCCGGCACcgcUGCCCcacgucagccgcgGCGCg -3'
miRNA:   3'- -AUgACGuGCGGCCGUGa--GCGGG-------------CGCG- -5'
30698 5' -62.1 NC_006552.1 + 50352 0.69 0.253689
Target:  5'- aUGCUGgGCGCCuugGGCuuguucagGCUCGCCagGUGCu -3'
miRNA:   3'- -AUGACgUGCGG---CCG--------UGAGCGGg-CGCG- -5'
30698 5' -62.1 NC_006552.1 + 21690 0.69 0.241498
Target:  5'- -gUUGCAgaUGCCGGCgAUUCGUaCCGUGCa -3'
miRNA:   3'- auGACGU--GCGGCCG-UGAGCG-GGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 8302 0.7 0.237938
Target:  5'- cGCUcaACGUCGGCGaggagugguaccgCGCCCGCGCu -3'
miRNA:   3'- aUGAcgUGCGGCCGUga-----------GCGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 52806 0.7 0.224133
Target:  5'- -cCUGCGCGUCGGCGgugUCGCCUGUcaccaGCu -3'
miRNA:   3'- auGACGUGCGGCCGUg--AGCGGGCG-----CG- -5'
30698 5' -62.1 NC_006552.1 + 49459 0.7 0.224133
Target:  5'- cGCUGCAUguaGCCGGCAUccggCGgUgGCGCg -3'
miRNA:   3'- aUGACGUG---CGGCCGUGa---GCgGgCGCG- -5'
30698 5' -62.1 NC_006552.1 + 45470 0.7 0.218584
Target:  5'- gGCgucgGcCACGuuGGCGCUgGCCgcUGCGCg -3'
miRNA:   3'- aUGa---C-GUGCggCCGUGAgCGG--GCGCG- -5'
30698 5' -62.1 NC_006552.1 + 39244 0.7 0.213154
Target:  5'- gACUGCACuaCCaGGCACcggaGCCCGCGa -3'
miRNA:   3'- aUGACGUGc-GG-CCGUGag--CGGGCGCg -5'
30698 5' -62.1 NC_006552.1 + 3501 0.71 0.197554
Target:  5'- cGCUcgacCACGCCGGCAucCUCaCCgCGCGCg -3'
miRNA:   3'- aUGAc---GUGCGGCCGU--GAGcGG-GCGCG- -5'
30698 5' -62.1 NC_006552.1 + 31988 0.71 0.182959
Target:  5'- -gUUGCACGCCGGC-CagGaugCCGCGCu -3'
miRNA:   3'- auGACGUGCGGCCGuGagCg--GGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.