miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30702 3' -52.3 NC_006552.1 + 9522 0.66 0.910379
Target:  5'- -aCUUCAUCGGcugccaggaAgGGGUCGAUcgCCGGg -3'
miRNA:   3'- cgGAAGUAGCU---------UgUCCGGUUGa-GGCC- -5'
30702 3' -52.3 NC_006552.1 + 20449 0.66 0.903775
Target:  5'- gGCC-UCGuUCGGcuCGGGCCGACcgUCGGc -3'
miRNA:   3'- -CGGaAGU-AGCUu-GUCCGGUUGa-GGCC- -5'
30702 3' -52.3 NC_006552.1 + 4828 0.66 0.9031
Target:  5'- gGCCa--GUCGcuagaccacaAGCGGGCCAACUCgcagaaaCGGg -3'
miRNA:   3'- -CGGaagUAGC----------UUGUCCGGUUGAG-------GCC- -5'
30702 3' -52.3 NC_006552.1 + 1382 0.66 0.896902
Target:  5'- -gCUUCggCGccCAGGCCAGCcagccgCCGGc -3'
miRNA:   3'- cgGAAGuaGCuuGUCCGGUUGa-----GGCC- -5'
30702 3' -52.3 NC_006552.1 + 35246 0.66 0.896902
Target:  5'- aGUUcUCAUCGucCAGGCCGACUaCGu -3'
miRNA:   3'- -CGGaAGUAGCuuGUCCGGUUGAgGCc -5'
30702 3' -52.3 NC_006552.1 + 1164 0.66 0.889761
Target:  5'- cGCCUgCAUCGGuagagcagGCAGGCgGGgaUCGGu -3'
miRNA:   3'- -CGGAaGUAGCU--------UGUCCGgUUgaGGCC- -5'
30702 3' -52.3 NC_006552.1 + 55300 0.66 0.889033
Target:  5'- cGCCcUCcUCGAACAccuggauagcaucGGUCAGCgccuugCCGGu -3'
miRNA:   3'- -CGGaAGuAGCUUGU-------------CCGGUUGa-----GGCC- -5'
30702 3' -52.3 NC_006552.1 + 58573 0.67 0.882359
Target:  5'- gGCCcgauaCAUCGAGCGGaGCCccaggcAGC-CCGGa -3'
miRNA:   3'- -CGGaa---GUAGCUUGUC-CGG------UUGaGGCC- -5'
30702 3' -52.3 NC_006552.1 + 6502 0.67 0.874699
Target:  5'- cGCCguugCAUCGGcACAccuGGUCAAgUUCCGGu -3'
miRNA:   3'- -CGGaa--GUAGCU-UGU---CCGGUU-GAGGCC- -5'
30702 3' -52.3 NC_006552.1 + 31641 0.67 0.866789
Target:  5'- gGCCgaCAgc-AGCAGGCCAGCgCCGa -3'
miRNA:   3'- -CGGaaGUagcUUGUCCGGUUGaGGCc -5'
30702 3' -52.3 NC_006552.1 + 57251 0.67 0.853628
Target:  5'- cGCgCUUCGucUCGAACAGGCUGAaguauucacgcugacCUCCu- -3'
miRNA:   3'- -CG-GAAGU--AGCUUGUCCGGUU---------------GAGGcc -5'
30702 3' -52.3 NC_006552.1 + 26971 0.68 0.841624
Target:  5'- aGCagaUCAUUGGACAGGUaGGCggcgCCGGu -3'
miRNA:   3'- -CGga-AGUAGCUUGUCCGgUUGa---GGCC- -5'
30702 3' -52.3 NC_006552.1 + 57902 0.68 0.841624
Target:  5'- cGCgCUUUAaUGccCGGGCCAGgUCCGGu -3'
miRNA:   3'- -CG-GAAGUaGCuuGUCCGGUUgAGGCC- -5'
30702 3' -52.3 NC_006552.1 + 38775 0.69 0.785617
Target:  5'- -aCUUCcgCGAaggcgaucagcgACGGcGCCGACUCCuGGg -3'
miRNA:   3'- cgGAAGuaGCU------------UGUC-CGGUUGAGG-CC- -5'
30702 3' -52.3 NC_006552.1 + 11002 0.7 0.734473
Target:  5'- cGCCUcacccaaccCAUCGAcACAacGGCCAgcGCUCUGGa -3'
miRNA:   3'- -CGGAa--------GUAGCU-UGU--CCGGU--UGAGGCC- -5'
30702 3' -52.3 NC_006552.1 + 44136 0.7 0.734473
Target:  5'- gGCCagcaggUCGUCGAuauuCAGGCCcccaggGGCUuCCGGc -3'
miRNA:   3'- -CGGa-----AGUAGCUu---GUCCGG------UUGA-GGCC- -5'
30702 3' -52.3 NC_006552.1 + 33772 0.7 0.713216
Target:  5'- gGUCUUCGcggugagagUGAcCGGGCCAGCgaUCCGGg -3'
miRNA:   3'- -CGGAAGUa--------GCUuGUCCGGUUG--AGGCC- -5'
30702 3' -52.3 NC_006552.1 + 64157 0.7 0.702462
Target:  5'- uGCCgggCAUCacGCAGGCuCAACUCaGGa -3'
miRNA:   3'- -CGGaa-GUAGcuUGUCCG-GUUGAGgCC- -5'
30702 3' -52.3 NC_006552.1 + 25832 0.71 0.679668
Target:  5'- gGCCggCAgcgguacggaaacUUGAACGGGuCCGACUCgCGGc -3'
miRNA:   3'- -CGGaaGU-------------AGCUUGUCC-GGUUGAG-GCC- -5'
30702 3' -52.3 NC_006552.1 + 51573 0.71 0.669833
Target:  5'- cGCCUU-GUCGGcACGGGCCuGCUCggCGGc -3'
miRNA:   3'- -CGGAAgUAGCU-UGUCCGGuUGAG--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.