miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30703 5' -55.8 NC_006552.1 + 50933 0.66 0.75997
Target:  5'- uGGCGCCGUaaccucgcaccaCGUUGCcgggggugaaguauUCGGCGCggGCCu -3'
miRNA:   3'- uCUGUGGCG------------GCAACGu-------------AGCCGUG--UGG- -5'
30703 5' -55.8 NC_006552.1 + 1835 0.72 0.377288
Target:  5'- aGGGCAacccgguCCGCaccUGCGUCGGCcACGCCa -3'
miRNA:   3'- -UCUGU-------GGCGgcaACGUAGCCG-UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 2893 0.72 0.378156
Target:  5'- cGGACACCGUCGgcGCGaCGGCAaguUCg -3'
miRNA:   3'- -UCUGUGGCGGCaaCGUaGCCGUgu-GG- -5'
30703 5' -55.8 NC_006552.1 + 110 0.72 0.395797
Target:  5'- uGGACGCCGCCGgcGC--CGGCAaACg -3'
miRNA:   3'- -UCUGUGGCGGCaaCGuaGCCGUgUGg -5'
30703 5' -55.8 NC_006552.1 + 39397 0.72 0.395797
Target:  5'- cGGCACgGCCGgugaUGCcggCGaGCACGCCc -3'
miRNA:   3'- uCUGUGgCGGCa---ACGua-GC-CGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 45244 0.72 0.404815
Target:  5'- uAGGCGCgGCCugcGCAUCGaGCACGuCCg -3'
miRNA:   3'- -UCUGUGgCGGcaaCGUAGC-CGUGU-GG- -5'
30703 5' -55.8 NC_006552.1 + 38204 0.71 0.451778
Target:  5'- uGGACACCugGCCGca-CAUUgGGCACGCCc -3'
miRNA:   3'- -UCUGUGG--CGGCaacGUAG-CCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 60067 0.71 0.461525
Target:  5'- cGGCACCuGCaCGgcgaUGCAUUGcGCAUGCCg -3'
miRNA:   3'- uCUGUGG-CG-GCa---ACGUAGC-CGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 14900 0.7 0.49851
Target:  5'- uGGCGcCCGCCGggcgcucaccgaagUUGCGUCGGCA-AUCg -3'
miRNA:   3'- uCUGU-GGCGGC--------------AACGUAGCCGUgUGG- -5'
30703 5' -55.8 NC_006552.1 + 6745 0.73 0.352702
Target:  5'- uGGCACCGUCGUcGCAggCGGCgugaagcacGCACUg -3'
miRNA:   3'- uCUGUGGCGGCAaCGUa-GCCG---------UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 12549 0.73 0.336419
Target:  5'- cAGGCACaugaucugGCCGgaGUAUCGGCGCugUg -3'
miRNA:   3'- -UCUGUGg-------CGGCaaCGUAGCCGUGugG- -5'
30703 5' -55.8 NC_006552.1 + 16092 0.74 0.320691
Target:  5'- cGGCACCGCUGccccacgucaGCcgCGGCGCGCUc -3'
miRNA:   3'- uCUGUGGCGGCaa--------CGuaGCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 42845 0.84 0.064082
Target:  5'- cGACACCGCCGccGUAUCGGUgugcaGCACCa -3'
miRNA:   3'- uCUGUGGCGGCaaCGUAGCCG-----UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 32332 0.8 0.125534
Target:  5'- uGGGCA-CGCCGUUauccaGCAUgGGCACGCCg -3'
miRNA:   3'- -UCUGUgGCGGCAA-----CGUAgCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 33941 0.78 0.164733
Target:  5'- uGuCGCCGCCGUUGgGggugaUCGGCAgGCCg -3'
miRNA:   3'- uCuGUGGCGGCAACgU-----AGCCGUgUGG- -5'
30703 5' -55.8 NC_006552.1 + 36631 0.77 0.193249
Target:  5'- cGGCACCaacacccucgcGCCGUUGUAgaCGGCAUGCCa -3'
miRNA:   3'- uCUGUGG-----------CGGCAACGUa-GCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 25912 0.76 0.231893
Target:  5'- -aGCGCUGCCGgcGCAggaagCGGCAgGCCu -3'
miRNA:   3'- ucUGUGGCGGCaaCGUa----GCCGUgUGG- -5'
30703 5' -55.8 NC_006552.1 + 10618 0.74 0.290906
Target:  5'- uGGACACCGCCacgGCGaaGGC-CGCCg -3'
miRNA:   3'- -UCUGUGGCGGcaaCGUagCCGuGUGG- -5'
30703 5' -55.8 NC_006552.1 + 10899 0.74 0.298143
Target:  5'- -cGCGCCGCCGgucgGCAagGGUgacGCACCg -3'
miRNA:   3'- ucUGUGGCGGCaa--CGUagCCG---UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 44235 0.74 0.30552
Target:  5'- cGGCACCgggaugGCCGUcaUGC-UCGGCGCGuCCg -3'
miRNA:   3'- uCUGUGG------CGGCA--ACGuAGCCGUGU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.