miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30703 5' -55.8 NC_006552.1 + 110 0.72 0.395797
Target:  5'- uGGACGCCGCCGgcGC--CGGCAaACg -3'
miRNA:   3'- -UCUGUGGCGGCaaCGuaGCCGUgUGg -5'
30703 5' -55.8 NC_006552.1 + 1202 0.67 0.682702
Target:  5'- ---gGCCGCCaaggGCcuggcCGGCACACCg -3'
miRNA:   3'- ucugUGGCGGcaa-CGua---GCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 1405 0.68 0.585621
Target:  5'- cGGACGCCaucaCCGgUGCGcuagcuUCGGCGC-CCa -3'
miRNA:   3'- -UCUGUGGc---GGCaACGU------AGCCGUGuGG- -5'
30703 5' -55.8 NC_006552.1 + 1835 0.72 0.377288
Target:  5'- aGGGCAacccgguCCGCaccUGCGUCGGCcACGCCa -3'
miRNA:   3'- -UCUGU-------GGCGgcaACGUAGCCG-UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 1963 0.67 0.682702
Target:  5'- cGGCACgugCGCCGgcugUGCcuaucgccUCGGCACcCCg -3'
miRNA:   3'- uCUGUG---GCGGCa---ACGu-------AGCCGUGuGG- -5'
30703 5' -55.8 NC_006552.1 + 2439 0.66 0.725062
Target:  5'- cGGGCGCUGCCGc-GCcugCGaGCgACGCCu -3'
miRNA:   3'- -UCUGUGGCGGCaaCGua-GC-CG-UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 2893 0.72 0.378156
Target:  5'- cGGACACCGUCGgcGCGaCGGCAaguUCg -3'
miRNA:   3'- -UCUGUGGCGGCaaCGUaGCCGUgu-GG- -5'
30703 5' -55.8 NC_006552.1 + 3846 0.66 0.742672
Target:  5'- aGGACAgCCGCagcaaCGUcgggagccgggccaUGUuUUGGCGCGCCg -3'
miRNA:   3'- -UCUGU-GGCG-----GCA--------------ACGuAGCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 4406 0.68 0.585621
Target:  5'- aAGACGCUugauGCCGgccUGCA-CGcGCGCAUCa -3'
miRNA:   3'- -UCUGUGG----CGGCa--ACGUaGC-CGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 6509 1.12 0.000758
Target:  5'- cAGACACCGCCGUUGCAUCGGCACACCu -3'
miRNA:   3'- -UCUGUGGCGGCAACGUAGCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 6745 0.73 0.352702
Target:  5'- uGGCACCGUCGUcGCAggCGGCgugaagcacGCACUg -3'
miRNA:   3'- uCUGUGGCGGCAaCGUa-GCCG---------UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 7954 0.67 0.683773
Target:  5'- uGGCACCGCCucgaGCGgaacgcccucgccgaCGGCGCACg -3'
miRNA:   3'- uCUGUGGCGGcaa-CGUa--------------GCCGUGUGg -5'
30703 5' -55.8 NC_006552.1 + 8338 0.66 0.714579
Target:  5'- cGGCAgCGCCGcgGCGagCGGCgaACGCa -3'
miRNA:   3'- uCUGUgGCGGCaaCGUa-GCCG--UGUGg -5'
30703 5' -55.8 NC_006552.1 + 10618 0.74 0.290906
Target:  5'- uGGACACCGCCacgGCGaaGGC-CGCCg -3'
miRNA:   3'- -UCUGUGGCGGcaaCGUagCCGuGUGG- -5'
30703 5' -55.8 NC_006552.1 + 10899 0.74 0.298143
Target:  5'- -cGCGCCGCCGgucgGCAagGGUgacGCACCg -3'
miRNA:   3'- ucUGUGGCGGCaa--CGUagCCG---UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 12240 0.68 0.585621
Target:  5'- --cCGCCGCCGgugcgGCAUCcgGGUGCGCg -3'
miRNA:   3'- ucuGUGGCGGCaa---CGUAG--CCGUGUGg -5'
30703 5' -55.8 NC_006552.1 + 12549 0.73 0.336419
Target:  5'- cAGGCACaugaucugGCCGgaGUAUCGGCGCugUg -3'
miRNA:   3'- -UCUGUGg-------CGGCaaCGUAGCCGUGugG- -5'
30703 5' -55.8 NC_006552.1 + 13159 0.68 0.607156
Target:  5'- gAGACAcCCGCCGcUGUcgAUCcGGagGCGCCg -3'
miRNA:   3'- -UCUGU-GGCGGCaACG--UAG-CCg-UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 13212 0.69 0.574905
Target:  5'- uGGcACGCCaGCagcgagaGcUUGCcgCGGCGCGCCa -3'
miRNA:   3'- -UC-UGUGG-CGg------C-AACGuaGCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 14900 0.7 0.49851
Target:  5'- uGGCGcCCGCCGggcgcucaccgaagUUGCGUCGGCA-AUCg -3'
miRNA:   3'- uCUGU-GGCGGC--------------AACGUAGCCGUgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.