miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30703 5' -55.8 NC_006552.1 + 16092 0.74 0.320691
Target:  5'- cGGCACCGCUGccccacgucaGCcgCGGCGCGCUc -3'
miRNA:   3'- uCUGUGGCGGCaa--------CGuaGCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 20730 0.66 0.725062
Target:  5'- -uGCGCUGCCGgcGC--CGGCagACGCCc -3'
miRNA:   3'- ucUGUGGCGGCaaCGuaGCCG--UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 25912 0.76 0.231893
Target:  5'- -aGCGCUGCCGgcGCAggaagCGGCAgGCCu -3'
miRNA:   3'- ucUGUGGCGGCaaCGUa----GCCGUgUGG- -5'
30703 5' -55.8 NC_006552.1 + 26309 0.66 0.745749
Target:  5'- cAGGCAgUGCgGUcccagccaGUAggagCGGCGCACCg -3'
miRNA:   3'- -UCUGUgGCGgCAa-------CGUa---GCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 26953 0.67 0.670894
Target:  5'- uAGGCGgCGCCGgucUGCGgaucgcgcugCGGCucguugaGCACCa -3'
miRNA:   3'- -UCUGUgGCGGCa--ACGUa---------GCCG-------UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 27363 0.66 0.755931
Target:  5'- uGGGCGCCgGCC--UGCAUggcacugaaugCGGCcuGCACCc -3'
miRNA:   3'- -UCUGUGG-CGGcaACGUA-----------GCCG--UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 29012 0.66 0.725062
Target:  5'- -aGCAUCGCCGgcacccGCGUCGGCuGCGa- -3'
miRNA:   3'- ucUGUGGCGGCaa----CGUAGCCG-UGUgg -5'
30703 5' -55.8 NC_006552.1 + 29322 0.66 0.725062
Target:  5'- gGGGCcUCGCC--UGCcgUGGCGCGCg -3'
miRNA:   3'- -UCUGuGGCGGcaACGuaGCCGUGUGg -5'
30703 5' -55.8 NC_006552.1 + 30104 0.66 0.735456
Target:  5'- cGGCGUCGCUGgUGCcgcUCGGCAUcuuGCCg -3'
miRNA:   3'- uCUGUGGCGGCaACGu--AGCCGUG---UGG- -5'
30703 5' -55.8 NC_006552.1 + 30582 0.69 0.564235
Target:  5'- cGGCGCaaCGCCaGUgaugGCAUCGGCGCugGCa -3'
miRNA:   3'- uCUGUG--GCGG-CAa---CGUAGCCGUG--UGg -5'
30703 5' -55.8 NC_006552.1 + 32332 0.8 0.125534
Target:  5'- uGGGCA-CGCCGUUauccaGCAUgGGCACGCCg -3'
miRNA:   3'- -UCUGUgGCGGCAA-----CGUAgCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 32828 0.67 0.693389
Target:  5'- -cACugCGUCGUUGagccaGUCGGC-CACg -3'
miRNA:   3'- ucUGugGCGGCAACg----UAGCCGuGUGg -5'
30703 5' -55.8 NC_006552.1 + 33191 0.68 0.628775
Target:  5'- cGGCugCGCgG-UGUccuuGUCGGCcaGCGCCa -3'
miRNA:   3'- uCUGugGCGgCaACG----UAGCCG--UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 33941 0.78 0.164733
Target:  5'- uGuCGCCGCCGUUGgGggugaUCGGCAgGCCg -3'
miRNA:   3'- uCuGUGGCGGCAACgU-----AGCCGUgUGG- -5'
30703 5' -55.8 NC_006552.1 + 36459 0.68 0.628775
Target:  5'- gGGAaGCCgGCCGgcgGCGaaGGCAUGCCg -3'
miRNA:   3'- -UCUgUGG-CGGCaa-CGUagCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 36631 0.77 0.193249
Target:  5'- cGGCACCaacacccucgcGCCGUUGUAgaCGGCAUGCCa -3'
miRNA:   3'- uCUGUGG-----------CGGCAACGUa-GCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 37984 0.67 0.702958
Target:  5'- cGGUACCGCUuggaaugGUcgGCAUCGGCGguCCa -3'
miRNA:   3'- uCUGUGGCGG-------CAa-CGUAGCCGUguGG- -5'
30703 5' -55.8 NC_006552.1 + 38204 0.71 0.451778
Target:  5'- uGGACACCugGCCGca-CAUUgGGCACGCCc -3'
miRNA:   3'- -UCUGUGG--CGGCaacGUAG-CCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 38338 0.67 0.650405
Target:  5'- cGGGCucucGCCGCCGcgUUGCAgcgCGGCAUc-- -3'
miRNA:   3'- -UCUG----UGGCGGC--AACGUa--GCCGUGugg -5'
30703 5' -55.8 NC_006552.1 + 38610 0.67 0.671969
Target:  5'- aAGAUGcCCGCCGUuccgGCGaCG-CACACCc -3'
miRNA:   3'- -UCUGU-GGCGGCAa---CGUaGCcGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.