miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30703 5' -55.8 NC_006552.1 + 64163 0.67 0.671969
Target:  5'- cGGCGCUGCCGg-GCAUCacGCAgGCUc -3'
miRNA:   3'- uCUGUGGCGGCaaCGUAGc-CGUgUGG- -5'
30703 5' -55.8 NC_006552.1 + 61374 0.68 0.61796
Target:  5'- cGGCAUCGac---GCAUCGGUAUACCu -3'
miRNA:   3'- uCUGUGGCggcaaCGUAGCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 60435 0.67 0.6612
Target:  5'- cGGCGgUGCCGgcUGCGUCaccugcGGCGcCACCa -3'
miRNA:   3'- uCUGUgGCGGCa-ACGUAG------CCGU-GUGG- -5'
30703 5' -55.8 NC_006552.1 + 60067 0.71 0.461525
Target:  5'- cGGCACCuGCaCGgcgaUGCAUUGcGCAUGCCg -3'
miRNA:   3'- uCUGUGG-CG-GCa---ACGUAGC-CGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 57734 0.68 0.611476
Target:  5'- cGGAC-CCGCCGagGUacugcgcaaacagcaGUCcGCGCACCg -3'
miRNA:   3'- -UCUGuGGCGGCaaCG---------------UAGcCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 56974 0.68 0.596374
Target:  5'- --uCGCCGCCGaagcGCAgcaugUCGGCGCggGCCa -3'
miRNA:   3'- ucuGUGGCGGCaa--CGU-----AGCCGUG--UGG- -5'
30703 5' -55.8 NC_006552.1 + 51868 0.68 0.61796
Target:  5'- cGGACugggGCCGggcUGCAuccUCGGCACGCa -3'
miRNA:   3'- -UCUGugg-CGGCa--ACGU---AGCCGUGUGg -5'
30703 5' -55.8 NC_006552.1 + 51385 0.66 0.735456
Target:  5'- cGACaacauaGCCGCUGUaggUGC--CGGCGCGCa -3'
miRNA:   3'- uCUG------UGGCGGCA---ACGuaGCCGUGUGg -5'
30703 5' -55.8 NC_006552.1 + 50933 0.66 0.75997
Target:  5'- uGGCGCCGUaaccucgcaccaCGUUGCcgggggugaaguauUCGGCGCggGCCu -3'
miRNA:   3'- uCUGUGGCG------------GCAACGu-------------AGCCGUG--UGG- -5'
30703 5' -55.8 NC_006552.1 + 50688 0.67 0.704018
Target:  5'- cGGAuCACCuucaccucuucGCCGUUGUcgCGGgC-CGCCa -3'
miRNA:   3'- -UCU-GUGG-----------CGGCAACGuaGCC-GuGUGG- -5'
30703 5' -55.8 NC_006552.1 + 46949 0.7 0.501567
Target:  5'- cAGuauuCGCCGCCGacuccaGCgcuccgGUUGGCGCACCa -3'
miRNA:   3'- -UCu---GUGGCGGCaa----CG------UAGCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 45244 0.72 0.404815
Target:  5'- uAGGCGCgGCCugcGCAUCGaGCACGuCCg -3'
miRNA:   3'- -UCUGUGgCGGcaaCGUAGC-CGUGU-GG- -5'
30703 5' -55.8 NC_006552.1 + 44235 0.74 0.30552
Target:  5'- cGGCACCgggaugGCCGUcaUGC-UCGGCGCGuCCg -3'
miRNA:   3'- uCUGUGG------CGGCA--ACGuAGCCGUGU-GG- -5'
30703 5' -55.8 NC_006552.1 + 43678 0.66 0.711419
Target:  5'- -uGCGCUGCCGcuUUGCGUgguggucacguccaUGGC-CACCg -3'
miRNA:   3'- ucUGUGGCGGC--AACGUA--------------GCCGuGUGG- -5'
30703 5' -55.8 NC_006552.1 + 42845 0.84 0.064082
Target:  5'- cGACACCGCCGccGUAUCGGUgugcaGCACCa -3'
miRNA:   3'- uCUGUGGCGGCaaCGUAGCCG-----UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 39397 0.72 0.395797
Target:  5'- cGGCACgGCCGgugaUGCcggCGaGCACGCCc -3'
miRNA:   3'- uCUGUGgCGGCa---ACGua-GC-CGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 38845 0.68 0.628775
Target:  5'- gAGGCGCgCGCCGgucacacugGCAUCcaaGCACAgCg -3'
miRNA:   3'- -UCUGUG-GCGGCaa-------CGUAGc--CGUGUgG- -5'
30703 5' -55.8 NC_006552.1 + 38684 0.68 0.639593
Target:  5'- cGGCGCCuGCCaccaGCAgCGGCgGCGCCg -3'
miRNA:   3'- uCUGUGG-CGGcaa-CGUaGCCG-UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 38610 0.67 0.671969
Target:  5'- aAGAUGcCCGCCGUuccgGCGaCG-CACACCc -3'
miRNA:   3'- -UCUGU-GGCGGCAa---CGUaGCcGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 38338 0.67 0.650405
Target:  5'- cGGGCucucGCCGCCGcgUUGCAgcgCGGCAUc-- -3'
miRNA:   3'- -UCUG----UGGCGGC--AACGUa--GCCGUGugg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.