miRNA display CGI


Results 21 - 40 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30703 5' -55.8 NC_006552.1 + 26953 0.67 0.670894
Target:  5'- uAGGCGgCGCCGgucUGCGgaucgcgcugCGGCucguugaGCACCa -3'
miRNA:   3'- -UCUGUgGCGGCa--ACGUa---------GCCG-------UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 60435 0.67 0.6612
Target:  5'- cGGCGgUGCCGgcUGCGUCaccugcGGCGcCACCa -3'
miRNA:   3'- uCUGUgGCGGCa-ACGUAG------CCGU-GUGG- -5'
30703 5' -55.8 NC_006552.1 + 38338 0.67 0.650405
Target:  5'- cGGGCucucGCCGCCGcgUUGCAgcgCGGCAUc-- -3'
miRNA:   3'- -UCUG----UGGCGGC--AACGUa--GCCGUGugg -5'
30703 5' -55.8 NC_006552.1 + 38684 0.68 0.639593
Target:  5'- cGGCGCCuGCCaccaGCAgCGGCgGCGCCg -3'
miRNA:   3'- uCUGUGG-CGGcaa-CGUaGCCG-UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 38845 0.68 0.628775
Target:  5'- gAGGCGCgCGCCGgucacacugGCAUCcaaGCACAgCg -3'
miRNA:   3'- -UCUGUG-GCGGCaa-------CGUAGc--CGUGUgG- -5'
30703 5' -55.8 NC_006552.1 + 33191 0.68 0.628775
Target:  5'- cGGCugCGCgG-UGUccuuGUCGGCcaGCGCCa -3'
miRNA:   3'- uCUGugGCGgCaACG----UAGCCG--UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 36459 0.68 0.628775
Target:  5'- gGGAaGCCgGCCGgcgGCGaaGGCAUGCCg -3'
miRNA:   3'- -UCUgUGG-CGGCaa-CGUagCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 51868 0.68 0.61796
Target:  5'- cGGACugggGCCGggcUGCAuccUCGGCACGCa -3'
miRNA:   3'- -UCUGugg-CGGCa--ACGU---AGCCGUGUGg -5'
30703 5' -55.8 NC_006552.1 + 61374 0.68 0.61796
Target:  5'- cGGCAUCGac---GCAUCGGUAUACCu -3'
miRNA:   3'- uCUGUGGCggcaaCGUAGCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 57734 0.68 0.611476
Target:  5'- cGGAC-CCGCCGagGUacugcgcaaacagcaGUCcGCGCACCg -3'
miRNA:   3'- -UCUGuGGCGGCaaCG---------------UAGcCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 13159 0.68 0.607156
Target:  5'- gAGACAcCCGCCGcUGUcgAUCcGGagGCGCCg -3'
miRNA:   3'- -UCUGU-GGCGGCaACG--UAG-CCg-UGUGG- -5'
30703 5' -55.8 NC_006552.1 + 56974 0.68 0.596374
Target:  5'- --uCGCCGCCGaagcGCAgcaugUCGGCGCggGCCa -3'
miRNA:   3'- ucuGUGGCGGCaa--CGU-----AGCCGUG--UGG- -5'
30703 5' -55.8 NC_006552.1 + 12240 0.68 0.585621
Target:  5'- --cCGCCGCCGgugcgGCAUCcgGGUGCGCg -3'
miRNA:   3'- ucuGUGGCGGCaa---CGUAG--CCGUGUGg -5'
30703 5' -55.8 NC_006552.1 + 1405 0.68 0.585621
Target:  5'- cGGACGCCaucaCCGgUGCGcuagcuUCGGCGC-CCa -3'
miRNA:   3'- -UCUGUGGc---GGCaACGU------AGCCGUGuGG- -5'
30703 5' -55.8 NC_006552.1 + 4406 0.68 0.585621
Target:  5'- aAGACGCUugauGCCGgccUGCA-CGcGCGCAUCa -3'
miRNA:   3'- -UCUGUGG----CGGCa--ACGUaGC-CGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 13212 0.69 0.574905
Target:  5'- uGGcACGCCaGCagcgagaGcUUGCcgCGGCGCGCCa -3'
miRNA:   3'- -UC-UGUGG-CGg------C-AACGuaGCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 30582 0.69 0.564235
Target:  5'- cGGCGCaaCGCCaGUgaugGCAUCGGCGCugGCa -3'
miRNA:   3'- uCUGUG--GCGG-CAa---CGUAGCCGUG--UGg -5'
30703 5' -55.8 NC_006552.1 + 46949 0.7 0.501567
Target:  5'- cAGuauuCGCCGCCGacuccaGCgcuccgGUUGGCGCACCa -3'
miRNA:   3'- -UCu---GUGGCGGCaa----CG------UAGCCGUGUGG- -5'
30703 5' -55.8 NC_006552.1 + 14900 0.7 0.49851
Target:  5'- uGGCGcCCGCCGggcgcucaccgaagUUGCGUCGGCA-AUCg -3'
miRNA:   3'- uCUGU-GGCGGC--------------AACGUAGCCGUgUGG- -5'
30703 5' -55.8 NC_006552.1 + 60067 0.71 0.461525
Target:  5'- cGGCACCuGCaCGgcgaUGCAUUGcGCAUGCCg -3'
miRNA:   3'- uCUGUGG-CG-GCa---ACGUAGC-CGUGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.