miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30706 5' -63 NC_006552.1 + 46350 0.66 0.384403
Target:  5'- cCUGGCUGGAGCUuuGCagcaucagcagUGCGCUGacGGUg -3'
miRNA:   3'- -GACCGGCUUCGGugCG-----------ACGCGGC--CCA- -5'
30706 5' -63 NC_006552.1 + 12253 0.66 0.37601
Target:  5'- cCUGcGCCGgcGCC-CGCcgccggUGCGgcauCCGGGUg -3'
miRNA:   3'- -GAC-CGGCuuCGGuGCG------ACGC----GGCCCA- -5'
30706 5' -63 NC_006552.1 + 32451 0.66 0.37601
Target:  5'- aUGGuuGAGGaaucgaCGCGCcagGuCGCCGGGc -3'
miRNA:   3'- gACCggCUUCg-----GUGCGa--C-GCGGCCCa -5'
30706 5' -63 NC_006552.1 + 5148 0.66 0.359601
Target:  5'- gUGGuuGggGCUGCGCUcgaggccugcgGCGgUCGGGc -3'
miRNA:   3'- gACCggCuuCGGUGCGA-----------CGC-GGCCCa -5'
30706 5' -63 NC_006552.1 + 12538 0.66 0.351586
Target:  5'- uCUGGCCGGAGUaucgGCGCUGUGaaauuCGGu- -3'
miRNA:   3'- -GACCGGCUUCGg---UGCGACGCg----GCCca -5'
30706 5' -63 NC_006552.1 + 42929 0.66 0.351586
Target:  5'- cCUGGCgCGGAGCCGguCGCU-CGCCGc-- -3'
miRNA:   3'- -GACCG-GCUUCGGU--GCGAcGCGGCcca -5'
30706 5' -63 NC_006552.1 + 557 0.66 0.343698
Target:  5'- -cGGCCGAcGCUguuCGCcGCGCCGccGGUc -3'
miRNA:   3'- gaCCGGCUuCGGu--GCGaCGCGGC--CCA- -5'
30706 5' -63 NC_006552.1 + 12885 0.66 0.343698
Target:  5'- -cGGCCuGAcuAGCCAC-CUcGCGCCGGc- -3'
miRNA:   3'- gaCCGG-CU--UCGGUGcGA-CGCGGCCca -5'
30706 5' -63 NC_006552.1 + 19221 0.66 0.335169
Target:  5'- -cGGUgaacugcaugucaCGAAGCCAUGCgcaccuuuUGgGCCGGGa -3'
miRNA:   3'- gaCCG-------------GCUUCGGUGCG--------ACgCGGCCCa -5'
30706 5' -63 NC_006552.1 + 3708 0.67 0.328307
Target:  5'- cCUGGCCGGucGaCUACGUgcGCGCCcGGGc -3'
miRNA:   3'- -GACCGGCUu-C-GGUGCGa-CGCGG-CCCa -5'
30706 5' -63 NC_006552.1 + 57088 0.67 0.320806
Target:  5'- gUGGCgCGuuccGGCCAUGCaucagccaucUGCGCCaGGUg -3'
miRNA:   3'- gACCG-GCu---UCGGUGCG----------ACGCGGcCCA- -5'
30706 5' -63 NC_006552.1 + 12953 0.67 0.313433
Target:  5'- cCUGGCCaacagcaaGGGCCaaACGCUGaaucuGCCGGGc -3'
miRNA:   3'- -GACCGGc-------UUCGG--UGCGACg----CGGCCCa -5'
30706 5' -63 NC_006552.1 + 3507 0.67 0.31052
Target:  5'- cCUGGCCGcucGaCCACGCcggcauccucaccGCGCgCGGGUa -3'
miRNA:   3'- -GACCGGCuu-C-GGUGCGa------------CGCG-GCCCA- -5'
30706 5' -63 NC_006552.1 + 6258 0.67 0.306189
Target:  5'- -cGGCCagccuuGCCACGUUGCGgCGGa- -3'
miRNA:   3'- gaCCGGcuu---CGGUGCGACGCgGCCca -5'
30706 5' -63 NC_006552.1 + 49641 0.67 0.299074
Target:  5'- uUGGCguCGggGCUugcUGCUGCGCCGccuGGUc -3'
miRNA:   3'- gACCG--GCuuCGGu--GCGACGCGGC---CCA- -5'
30706 5' -63 NC_006552.1 + 39642 0.67 0.29837
Target:  5'- -cGGCCGAaguacucgccaccGGCCaguACGCUGaGCCGcGGg -3'
miRNA:   3'- gaCCGGCU-------------UCGG---UGCGACgCGGC-CCa -5'
30706 5' -63 NC_006552.1 + 53241 0.68 0.252842
Target:  5'- -aGGUCGGAGCgCaugGCGgUGUGCUGGGg -3'
miRNA:   3'- gaCCGGCUUCG-G---UGCgACGCGGCCCa -5'
30706 5' -63 NC_006552.1 + 30371 0.69 0.2349
Target:  5'- -cGGCCGAGGCgGCGCagGuCGuaGGGg -3'
miRNA:   3'- gaCCGGCUUCGgUGCGa-C-GCggCCCa -5'
30706 5' -63 NC_006552.1 + 2227 0.69 0.218039
Target:  5'- aCUGGCCGgcGCCguucuucugccgGCGgacCUGCGCCGccaGGUg -3'
miRNA:   3'- -GACCGGCuuCGG------------UGC---GACGCGGC---CCA- -5'
30706 5' -63 NC_006552.1 + 38736 0.7 0.207381
Target:  5'- -gGGCCGcgcAGCCACGCcacagccGCGCCGuaGGUg -3'
miRNA:   3'- gaCCGGCu--UCGGUGCGa------CGCGGC--CCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.