Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30708 | 5' | -58.6 | NC_006552.1 | + | 60113 | 0.69 | 0.374768 |
Target: 5'- aGCgCUAUCGCAGCCAgaacGGCGcccaacucGCgGGCGg -3' miRNA: 3'- aUG-GGUAGUGUCGGU----UCGU--------CGgCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 39401 | 0.68 | 0.39233 |
Target: 5'- gUACCgG-CACGGCC-GGUgauGCCGGCGa -3' miRNA: 3'- -AUGGgUaGUGUCGGuUCGu--CGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 1971 | 0.68 | 0.39233 |
Target: 5'- aACCC-UCGCGGCaCGuGC-GCCGGCu -3' miRNA: 3'- aUGGGuAGUGUCG-GUuCGuCGGCCGc -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 44027 | 0.68 | 0.41042 |
Target: 5'- gGCgCAUC-CGGCCGcgucGguGCCGGCa -3' miRNA: 3'- aUGgGUAGuGUCGGUu---CguCGGCCGc -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 6529 | 0.68 | 0.426197 |
Target: 5'- gUACaCCAUCACAGCgaAGGCAGacaccgccguugcaUCGGCa -3' miRNA: 3'- -AUG-GGUAGUGUCGg-UUCGUC--------------GGCCGc -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 20804 | 0.68 | 0.429019 |
Target: 5'- -gUCCAgucaGCAGCCcGGCgauugcgcugccGGCCGGCGa -3' miRNA: 3'- auGGGUag--UGUCGGuUCG------------UCGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 39335 | 0.67 | 0.451979 |
Target: 5'- gUGCCCAUgacguagccguucucCGCuAGCCAcacGGCGaCCGGCGa -3' miRNA: 3'- -AUGGGUA---------------GUG-UCGGU---UCGUcGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 21127 | 0.67 | 0.466665 |
Target: 5'- cGCCCGgcgcgcuuccucuUCGCcGCCGcGCucuuGGCCGGCGc -3' miRNA: 3'- aUGGGU-------------AGUGuCGGUuCG----UCGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 23799 | 0.67 | 0.467653 |
Target: 5'- cACUCAggguCAGCCAGGCAGCgcgccaguuCGGCc -3' miRNA: 3'- aUGGGUagu-GUCGGUUCGUCG---------GCCGc -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 15427 | 0.67 | 0.472608 |
Target: 5'- cGCCCGgaccagaaguucgucCACGGCCAAauugaacuggccuauGCGGUCGGCu -3' miRNA: 3'- aUGGGUa--------------GUGUCGGUU---------------CGUCGGCCGc -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 12610 | 0.67 | 0.47759 |
Target: 5'- aGCCUGUCauacaguggaACGGCCAAGacggccugccgcCGGUCGGCGu -3' miRNA: 3'- aUGGGUAG----------UGUCGGUUC------------GUCGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 32387 | 0.67 | 0.47759 |
Target: 5'- aGCCCGg---AGCCAuacaGGCGGUCGGUGa -3' miRNA: 3'- aUGGGUagugUCGGU----UCGUCGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 46927 | 0.67 | 0.47759 |
Target: 5'- cGCuCCGguuggCGCA-CC-AGCAGCCGGCa -3' miRNA: 3'- aUG-GGUa----GUGUcGGuUCGUCGGCCGc -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 54227 | 0.67 | 0.47759 |
Target: 5'- cACCCAggccUC-CAGCCAGGCacggaAGUucuCGGCGg -3' miRNA: 3'- aUGGGU----AGuGUCGGUUCG-----UCG---GCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 48818 | 0.67 | 0.48763 |
Target: 5'- gGCCCGccCAUAGCCAuccCGGCCaGCGu -3' miRNA: 3'- aUGGGUa-GUGUCGGUuc-GUCGGcCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 25344 | 0.67 | 0.497769 |
Target: 5'- -gUCC-UCACAGCCGc-CAGUCGGUGg -3' miRNA: 3'- auGGGuAGUGUCGGUucGUCGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 30047 | 0.67 | 0.497769 |
Target: 5'- gGCCCuggCAgAGCgCGAacaAGCCGGCGg -3' miRNA: 3'- aUGGGua-GUgUCG-GUUcg-UCGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 19090 | 0.67 | 0.497769 |
Target: 5'- gGCCCccuggGUCAC-GCCGAGCAGCuCcGCu -3' miRNA: 3'- aUGGG-----UAGUGuCGGUUCGUCG-GcCGc -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 39009 | 0.66 | 0.508001 |
Target: 5'- cGCCCG-CGCcaguaGGCCAGGUgcuuGCCGGuCGg -3' miRNA: 3'- aUGGGUaGUG-----UCGGUUCGu---CGGCC-GC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 52049 | 0.66 | 0.518321 |
Target: 5'- gUGCCCAgcuCGGCCAccagGGCGucGCgGGCGu -3' miRNA: 3'- -AUGGGUaguGUCGGU----UCGU--CGgCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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