miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30708 5' -58.6 NC_006552.1 + 7525 1.08 0.000587
Target:  5'- gUACCCAUCACAGCCAAGCAGCCGGCGg -3'
miRNA:   3'- -AUGGGUAGUGUCGGUUCGUCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 34102 0.76 0.120611
Target:  5'- aGCCCucacaAUCACAGgggcguUCAAGCGGCCGGCa -3'
miRNA:   3'- aUGGG-----UAGUGUC------GGUUCGUCGGCCGc -5'
30708 5' -58.6 NC_006552.1 + 48566 0.76 0.127442
Target:  5'- aUACCCAguuUCuuGGCCAAGCuaccGCCGGCa -3'
miRNA:   3'- -AUGGGU---AGugUCGGUUCGu---CGGCCGc -5'
30708 5' -58.6 NC_006552.1 + 1375 0.75 0.14611
Target:  5'- cGCCCAggcCAGCC-AGCcGCCGGCGg -3'
miRNA:   3'- aUGGGUaguGUCGGuUCGuCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 20834 0.75 0.150132
Target:  5'- cAUUCGUCAguGCC-AGCAGCCGGuCGg -3'
miRNA:   3'- aUGGGUAGUguCGGuUCGUCGGCC-GC- -5'
30708 5' -58.6 NC_006552.1 + 51389 0.75 0.158478
Target:  5'- cGCCCGacaaCAUAGCCGcuguAGguGCCGGCGc -3'
miRNA:   3'- aUGGGUa---GUGUCGGU----UCguCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 4661 0.73 0.191072
Target:  5'- -cCCCGUCuCGGCC-AGCAccguucGCCGGCGa -3'
miRNA:   3'- auGGGUAGuGUCGGuUCGU------CGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 48871 0.73 0.206762
Target:  5'- cAUCCGUCA-AGCCAcgggauGCGGCCGGCu -3'
miRNA:   3'- aUGGGUAGUgUCGGUu-----CGUCGGCCGc -5'
30708 5' -58.6 NC_006552.1 + 37852 0.72 0.253461
Target:  5'- aUACCCAUguagcccCACccgGGCCAGG-AGCCGGCa -3'
miRNA:   3'- -AUGGGUA-------GUG---UCGGUUCgUCGGCCGc -5'
30708 5' -58.6 NC_006552.1 + 47562 0.71 0.260611
Target:  5'- uUGCUCA-C-CAGCCAGGC-GCUGGCGa -3'
miRNA:   3'- -AUGGGUaGuGUCGGUUCGuCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 54508 0.71 0.280948
Target:  5'- cUugCCAUCAguGCCGcgguGcCAGCCGGUa -3'
miRNA:   3'- -AugGGUAGUguCGGUu---C-GUCGGCCGc -5'
30708 5' -58.6 NC_006552.1 + 57612 0.71 0.283752
Target:  5'- aUGCCguUCACAGCCucggaaaggucgcccAuguGCAGaCCGGCGg -3'
miRNA:   3'- -AUGGguAGUGUCGG---------------Uu--CGUC-GGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 8951 0.71 0.288001
Target:  5'- cACCCAccgucgcagaacUgGCAGCCAA--GGCCGGCGu -3'
miRNA:   3'- aUGGGU------------AgUGUCGGUUcgUCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 29125 0.7 0.317604
Target:  5'- uUGCCCuguugGUCGCcaccAGCCgAAGC-GCCGGCGu -3'
miRNA:   3'- -AUGGG-----UAGUG----UCGG-UUCGuCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 61626 0.7 0.325353
Target:  5'- cGCCaggUGCuGGCCGAGCcGCCGGCGc -3'
miRNA:   3'- aUGGguaGUG-UCGGUUCGuCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 47248 0.69 0.341271
Target:  5'- uUACCCGagGCGcGCCGAGUuaCCGGCGu -3'
miRNA:   3'- -AUGGGUagUGU-CGGUUCGucGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 49375 0.69 0.341271
Target:  5'- -uCCCAUC-CAGUggcaCGGGCuuGCCGGCGa -3'
miRNA:   3'- auGGGUAGuGUCG----GUUCGu-CGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 62291 0.69 0.349439
Target:  5'- --aUCAUCACcGCCGauAGC-GCCGGCGg -3'
miRNA:   3'- augGGUAGUGuCGGU--UCGuCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 3334 0.69 0.357745
Target:  5'- cGCCUgaGUUACAGcCCAGGCugaauugcGCCGGCu -3'
miRNA:   3'- aUGGG--UAGUGUC-GGUUCGu-------CGGCCGc -5'
30708 5' -58.6 NC_006552.1 + 25927 0.69 0.374768
Target:  5'- gAUCagGUgACAGCCAGcGCuGCCGGCGc -3'
miRNA:   3'- aUGGg-UAgUGUCGGUU-CGuCGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.