miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30708 5' -58.6 NC_006552.1 + 1375 0.75 0.14611
Target:  5'- cGCCCAggcCAGCC-AGCcGCCGGCGg -3'
miRNA:   3'- aUGGGUaguGUCGGuUCGuCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 1971 0.68 0.39233
Target:  5'- aACCC-UCGCGGCaCGuGC-GCCGGCu -3'
miRNA:   3'- aUGGGuAGUGUCG-GUuCGuCGGCCGc -5'
30708 5' -58.6 NC_006552.1 + 3334 0.69 0.357745
Target:  5'- cGCCUgaGUUACAGcCCAGGCugaauugcGCCGGCu -3'
miRNA:   3'- aUGGG--UAGUGUC-GGUUCGu-------CGGCCGc -5'
30708 5' -58.6 NC_006552.1 + 4661 0.73 0.191072
Target:  5'- -cCCCGUCuCGGCC-AGCAccguucGCCGGCGa -3'
miRNA:   3'- auGGGUAGuGUCGGuUCGU------CGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 5739 0.66 0.539202
Target:  5'- -cCCCAcUUggGCGGCUGAGCuGCUGGUGa -3'
miRNA:   3'- auGGGU-AG--UGUCGGUUCGuCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 6529 0.68 0.426197
Target:  5'- gUACaCCAUCACAGCgaAGGCAGacaccgccguugcaUCGGCa -3'
miRNA:   3'- -AUG-GGUAGUGUCGg-UUCGUC--------------GGCCGc -5'
30708 5' -58.6 NC_006552.1 + 7525 1.08 0.000587
Target:  5'- gUACCCAUCACAGCCAAGCAGCCGGCGg -3'
miRNA:   3'- -AUGGGUAGUGUCGGUUCGUCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 8951 0.71 0.288001
Target:  5'- cACCCAccgucgcagaacUgGCAGCCAA--GGCCGGCGu -3'
miRNA:   3'- aUGGGU------------AgUGUCGGUUcgUCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 12610 0.67 0.47759
Target:  5'- aGCCUGUCauacaguggaACGGCCAAGacggccugccgcCGGUCGGCGu -3'
miRNA:   3'- aUGGGUAG----------UGUCGGUUC------------GUCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 15427 0.67 0.472608
Target:  5'- cGCCCGgaccagaaguucgucCACGGCCAAauugaacuggccuauGCGGUCGGCu -3'
miRNA:   3'- aUGGGUa--------------GUGUCGGUU---------------CGUCGGCCGc -5'
30708 5' -58.6 NC_006552.1 + 19090 0.67 0.497769
Target:  5'- gGCCCccuggGUCAC-GCCGAGCAGCuCcGCu -3'
miRNA:   3'- aUGGG-----UAGUGuCGGUUCGUCG-GcCGc -5'
30708 5' -58.6 NC_006552.1 + 20311 0.66 0.54975
Target:  5'- aACCaugagUugGGC--AGCGGCCGGCGg -3'
miRNA:   3'- aUGGgua--GugUCGguUCGUCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 20804 0.68 0.429019
Target:  5'- -gUCCAgucaGCAGCCcGGCgauugcgcugccGGCCGGCGa -3'
miRNA:   3'- auGGGUag--UGUCGGuUCG------------UCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 20834 0.75 0.150132
Target:  5'- cAUUCGUCAguGCC-AGCAGCCGGuCGg -3'
miRNA:   3'- aUGGGUAGUguCGGuUCGUCGGCC-GC- -5'
30708 5' -58.6 NC_006552.1 + 21127 0.67 0.466665
Target:  5'- cGCCCGgcgcgcuuccucuUCGCcGCCGcGCucuuGGCCGGCGc -3'
miRNA:   3'- aUGGGU-------------AGUGuCGGUuCG----UCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 23799 0.67 0.467653
Target:  5'- cACUCAggguCAGCCAGGCAGCgcgccaguuCGGCc -3'
miRNA:   3'- aUGGGUagu-GUCGGUUCGUCG---------GCCGc -5'
30708 5' -58.6 NC_006552.1 + 25344 0.67 0.497769
Target:  5'- -gUCC-UCACAGCCGc-CAGUCGGUGg -3'
miRNA:   3'- auGGGuAGUGUCGGUucGUCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 25927 0.69 0.374768
Target:  5'- gAUCagGUgACAGCCAGcGCuGCCGGCGc -3'
miRNA:   3'- aUGGg-UAgUGUCGGUU-CGuCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 29125 0.7 0.317604
Target:  5'- uUGCCCuguugGUCGCcaccAGCCgAAGC-GCCGGCGu -3'
miRNA:   3'- -AUGGG-----UAGUG----UCGG-UUCGuCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 29369 0.66 0.543413
Target:  5'- gAUCCAUgGCAGCCuGAGCcGCCGccaguugguuguccuGCGa -3'
miRNA:   3'- aUGGGUAgUGUCGG-UUCGuCGGC---------------CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.