miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30708 5' -58.6 NC_006552.1 + 65002 0.66 0.518321
Target:  5'- aACCCAUgAcCAGUC-AGCAGCCcaucgaacccaaGGCGc -3'
miRNA:   3'- aUGGGUAgU-GUCGGuUCGUCGG------------CCGC- -5'
30708 5' -58.6 NC_006552.1 + 62548 0.66 0.539202
Target:  5'- gGCCCuUCugGGCUAGGgAccGCgCGGCGc -3'
miRNA:   3'- aUGGGuAGugUCGGUUCgU--CG-GCCGC- -5'
30708 5' -58.6 NC_006552.1 + 62291 0.69 0.349439
Target:  5'- --aUCAUCACcGCCGauAGC-GCCGGCGg -3'
miRNA:   3'- augGGUAGUGuCGGU--UCGuCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 61626 0.7 0.325353
Target:  5'- cGCCaggUGCuGGCCGAGCcGCCGGCGc -3'
miRNA:   3'- aUGGguaGUG-UCGGUUCGuCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 60113 0.69 0.374768
Target:  5'- aGCgCUAUCGCAGCCAgaacGGCGcccaacucGCgGGCGg -3'
miRNA:   3'- aUG-GGUAGUGUCGGU----UCGU--------CGgCCGC- -5'
30708 5' -58.6 NC_006552.1 + 57612 0.71 0.283752
Target:  5'- aUGCCguUCACAGCCucggaaaggucgcccAuguGCAGaCCGGCGg -3'
miRNA:   3'- -AUGGguAGUGUCGG---------------Uu--CGUC-GGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 54508 0.71 0.280948
Target:  5'- cUugCCAUCAguGCCGcgguGcCAGCCGGUa -3'
miRNA:   3'- -AugGGUAGUguCGGUu---C-GUCGGCCGc -5'
30708 5' -58.6 NC_006552.1 + 54227 0.67 0.47759
Target:  5'- cACCCAggccUC-CAGCCAGGCacggaAGUucuCGGCGg -3'
miRNA:   3'- aUGGGU----AGuGUCGGUUCG-----UCG---GCCGC- -5'
30708 5' -58.6 NC_006552.1 + 52049 0.66 0.518321
Target:  5'- gUGCCCAgcuCGGCCAccagGGCGucGCgGGCGu -3'
miRNA:   3'- -AUGGGUaguGUCGGU----UCGU--CGgCCGC- -5'
30708 5' -58.6 NC_006552.1 + 51389 0.75 0.158478
Target:  5'- cGCCCGacaaCAUAGCCGcuguAGguGCCGGCGc -3'
miRNA:   3'- aUGGGUa---GUGUCGGU----UCguCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 49375 0.69 0.341271
Target:  5'- -uCCCAUC-CAGUggcaCGGGCuuGCCGGCGa -3'
miRNA:   3'- auGGGUAGuGUCG----GUUCGu-CGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 48871 0.73 0.206762
Target:  5'- cAUCCGUCA-AGCCAcgggauGCGGCCGGCu -3'
miRNA:   3'- aUGGGUAGUgUCGGUu-----CGUCGGCCGc -5'
30708 5' -58.6 NC_006552.1 + 48818 0.67 0.48763
Target:  5'- gGCCCGccCAUAGCCAuccCGGCCaGCGu -3'
miRNA:   3'- aUGGGUa-GUGUCGGUuc-GUCGGcCGC- -5'
30708 5' -58.6 NC_006552.1 + 48566 0.76 0.127442
Target:  5'- aUACCCAguuUCuuGGCCAAGCuaccGCCGGCa -3'
miRNA:   3'- -AUGGGU---AGugUCGGUUCGu---CGGCCGc -5'
30708 5' -58.6 NC_006552.1 + 47562 0.71 0.260611
Target:  5'- uUGCUCA-C-CAGCCAGGC-GCUGGCGa -3'
miRNA:   3'- -AUGGGUaGuGUCGGUUCGuCGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 47248 0.69 0.341271
Target:  5'- uUACCCGagGCGcGCCGAGUuaCCGGCGu -3'
miRNA:   3'- -AUGGGUagUGU-CGGUUCGucGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 46927 0.67 0.47759
Target:  5'- cGCuCCGguuggCGCA-CC-AGCAGCCGGCa -3'
miRNA:   3'- aUG-GGUa----GUGUcGGuUCGUCGGCCGc -5'
30708 5' -58.6 NC_006552.1 + 44027 0.68 0.41042
Target:  5'- gGCgCAUC-CGGCCGcgucGguGCCGGCa -3'
miRNA:   3'- aUGgGUAGuGUCGGUu---CguCGGCCGc -5'
30708 5' -58.6 NC_006552.1 + 39401 0.68 0.39233
Target:  5'- gUACCgG-CACGGCC-GGUgauGCCGGCGa -3'
miRNA:   3'- -AUGGgUaGUGUCGGuUCGu--CGGCCGC- -5'
30708 5' -58.6 NC_006552.1 + 39335 0.67 0.451979
Target:  5'- gUGCCCAUgacguagccguucucCGCuAGCCAcacGGCGaCCGGCGa -3'
miRNA:   3'- -AUGGGUA---------------GUG-UCGGU---UCGUcGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.