Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30708 | 5' | -58.6 | NC_006552.1 | + | 20311 | 0.66 | 0.54975 |
Target: 5'- aACCaugagUugGGC--AGCGGCCGGCGg -3' miRNA: 3'- aUGGgua--GugUCGguUCGUCGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 8951 | 0.71 | 0.288001 |
Target: 5'- cACCCAccgucgcagaacUgGCAGCCAA--GGCCGGCGu -3' miRNA: 3'- aUGGGU------------AgUGUCGGUUcgUCGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 29125 | 0.7 | 0.317604 |
Target: 5'- uUGCCCuguugGUCGCcaccAGCCgAAGC-GCCGGCGu -3' miRNA: 3'- -AUGGG-----UAGUG----UCGG-UUCGuCGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 61626 | 0.7 | 0.325353 |
Target: 5'- cGCCaggUGCuGGCCGAGCcGCCGGCGc -3' miRNA: 3'- aUGGguaGUG-UCGGUUCGuCGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 49375 | 0.69 | 0.341271 |
Target: 5'- -uCCCAUC-CAGUggcaCGGGCuuGCCGGCGa -3' miRNA: 3'- auGGGUAGuGUCG----GUUCGu-CGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 47248 | 0.69 | 0.341271 |
Target: 5'- uUACCCGagGCGcGCCGAGUuaCCGGCGu -3' miRNA: 3'- -AUGGGUagUGU-CGGUUCGucGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 62291 | 0.69 | 0.349439 |
Target: 5'- --aUCAUCACcGCCGauAGC-GCCGGCGg -3' miRNA: 3'- augGGUAGUGuCGGU--UCGuCGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 3334 | 0.69 | 0.357745 |
Target: 5'- cGCCUgaGUUACAGcCCAGGCugaauugcGCCGGCu -3' miRNA: 3'- aUGGG--UAGUGUC-GGUUCGu-------CGGCCGc -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 60113 | 0.69 | 0.374768 |
Target: 5'- aGCgCUAUCGCAGCCAgaacGGCGcccaacucGCgGGCGg -3' miRNA: 3'- aUG-GGUAGUGUCGGU----UCGU--------CGgCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 57612 | 0.71 | 0.283752 |
Target: 5'- aUGCCguUCACAGCCucggaaaggucgcccAuguGCAGaCCGGCGg -3' miRNA: 3'- -AUGGguAGUGUCGG---------------Uu--CGUC-GGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 54508 | 0.71 | 0.280948 |
Target: 5'- cUugCCAUCAguGCCGcgguGcCAGCCGGUa -3' miRNA: 3'- -AugGGUAGUguCGGUu---C-GUCGGCCGc -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 47562 | 0.71 | 0.260611 |
Target: 5'- uUGCUCA-C-CAGCCAGGC-GCUGGCGa -3' miRNA: 3'- -AUGGGUaGuGUCGGUUCGuCGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 34102 | 0.76 | 0.120611 |
Target: 5'- aGCCCucacaAUCACAGgggcguUCAAGCGGCCGGCa -3' miRNA: 3'- aUGGG-----UAGUGUC------GGUUCGUCGGCCGc -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 48566 | 0.76 | 0.127442 |
Target: 5'- aUACCCAguuUCuuGGCCAAGCuaccGCCGGCa -3' miRNA: 3'- -AUGGGU---AGugUCGGUUCGu---CGGCCGc -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 1375 | 0.75 | 0.14611 |
Target: 5'- cGCCCAggcCAGCC-AGCcGCCGGCGg -3' miRNA: 3'- aUGGGUaguGUCGGuUCGuCGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 20834 | 0.75 | 0.150132 |
Target: 5'- cAUUCGUCAguGCC-AGCAGCCGGuCGg -3' miRNA: 3'- aUGGGUAGUguCGGuUCGUCGGCC-GC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 51389 | 0.75 | 0.158478 |
Target: 5'- cGCCCGacaaCAUAGCCGcuguAGguGCCGGCGc -3' miRNA: 3'- aUGGGUa---GUGUCGGU----UCguCGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 4661 | 0.73 | 0.191072 |
Target: 5'- -cCCCGUCuCGGCC-AGCAccguucGCCGGCGa -3' miRNA: 3'- auGGGUAGuGUCGGuUCGU------CGGCCGC- -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 48871 | 0.73 | 0.206762 |
Target: 5'- cAUCCGUCA-AGCCAcgggauGCGGCCGGCu -3' miRNA: 3'- aUGGGUAGUgUCGGUu-----CGUCGGCCGc -5' |
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30708 | 5' | -58.6 | NC_006552.1 | + | 37852 | 0.72 | 0.253461 |
Target: 5'- aUACCCAUguagcccCACccgGGCCAGG-AGCCGGCa -3' miRNA: 3'- -AUGGGUA-------GUG---UCGGUUCgUCGGCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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