miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30709 5' -51.3 NC_006552.1 + 7658 1.14 0.001289
Target:  5'- aGUUCUGCCGCAAUUGCCAUGCACACCg -3'
miRNA:   3'- -CAAGACGGCGUUAACGGUACGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 52355 0.75 0.438398
Target:  5'- cUUCUGCUGCGc-UGCCcgGCGgGCCu -3'
miRNA:   3'- cAAGACGGCGUuaACGGuaCGUgUGG- -5'
30709 5' -51.3 NC_006552.1 + 20596 0.74 0.511255
Target:  5'- -cUCguagGCgGCAAUgaacGCCAUGCGCGCg -3'
miRNA:   3'- caAGa---CGgCGUUAa---CGGUACGUGUGg -5'
30709 5' -51.3 NC_006552.1 + 37184 0.73 0.544008
Target:  5'- uGUUCUGCgGCGAguacgGCg--GCGCGCCg -3'
miRNA:   3'- -CAAGACGgCGUUaa---CGguaCGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 46720 0.73 0.555082
Target:  5'- ----cGCCGCAAgcGCCccacGCACGCCg -3'
miRNA:   3'- caagaCGGCGUUaaCGGua--CGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 60388 0.72 0.577416
Target:  5'- --cCUGCgGCGGggGCgAUGCGCACg -3'
miRNA:   3'- caaGACGgCGUUaaCGgUACGUGUGg -5'
30709 5' -51.3 NC_006552.1 + 55929 0.72 0.599941
Target:  5'- -gUCUGCUGUAG-UGCCGUgGUAgACCa -3'
miRNA:   3'- caAGACGGCGUUaACGGUA-CGUgUGG- -5'
30709 5' -51.3 NC_006552.1 + 26740 0.72 0.611252
Target:  5'- uGUUCcuggaUGCCGCuggugGCCGUGCcuuuGCGCCc -3'
miRNA:   3'- -CAAG-----ACGGCGuuaa-CGGUACG----UGUGG- -5'
30709 5' -51.3 NC_006552.1 + 59927 0.72 0.615782
Target:  5'- --cCUGCCgGUAGUUGCCGgcgagcaagucgcgGCGCAUCg -3'
miRNA:   3'- caaGACGG-CGUUAACGGUa-------------CGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 44022 0.71 0.667885
Target:  5'- -aUCcgGCCGCGucggUGCCG-GCACAUCc -3'
miRNA:   3'- caAGa-CGGCGUua--ACGGUaCGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 57093 0.71 0.667885
Target:  5'- gGUUCgUGgCGCGuuccgGCCAUGCAUcaGCCa -3'
miRNA:   3'- -CAAG-ACgGCGUuaa--CGGUACGUG--UGG- -5'
30709 5' -51.3 NC_006552.1 + 1205 0.7 0.734522
Target:  5'- --cCUgGCCGcCAAggGCCuggccgGCACACCg -3'
miRNA:   3'- caaGA-CGGC-GUUaaCGGua----CGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 10656 0.69 0.745318
Target:  5'- cUUC-GCCGCAAUcaUGCCG-GCGCaagGCCu -3'
miRNA:   3'- cAAGaCGGCGUUA--ACGGUaCGUG---UGG- -5'
30709 5' -51.3 NC_006552.1 + 50875 0.69 0.755993
Target:  5'- -cUCgGCCuGUAAccucuUUGCCA-GCACGCCg -3'
miRNA:   3'- caAGaCGG-CGUU-----AACGGUaCGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 19215 0.69 0.766534
Target:  5'- --aCUGCaUGUcacgaaGCCAUGCGCACCu -3'
miRNA:   3'- caaGACG-GCGuuaa--CGGUACGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 53075 0.69 0.772789
Target:  5'- uUUCUGCCGCAcgGUguccaggaacuugGCCuUGC-CGCCc -3'
miRNA:   3'- cAAGACGGCGU--UAa------------CGGuACGuGUGG- -5'
30709 5' -51.3 NC_006552.1 + 52577 0.68 0.826274
Target:  5'- -gUCgccgGCCGUAGUcUGCCcgGCGCugGCUa -3'
miRNA:   3'- caAGa---CGGCGUUA-ACGGuaCGUG--UGG- -5'
30709 5' -51.3 NC_006552.1 + 12070 0.68 0.826274
Target:  5'- -cUCUGCUcuGCGA-UGCCGccgGCaACACCa -3'
miRNA:   3'- caAGACGG--CGUUaACGGUa--CG-UGUGG- -5'
30709 5' -51.3 NC_006552.1 + 9837 0.68 0.826274
Target:  5'- gGUUCaGCCGCGAg-GCgGUGgaACACCu -3'
miRNA:   3'- -CAAGaCGGCGUUaaCGgUACg-UGUGG- -5'
30709 5' -51.3 NC_006552.1 + 57967 0.67 0.853372
Target:  5'- --gCUGCCGCGg--GCC-UGCGcCAUCa -3'
miRNA:   3'- caaGACGGCGUuaaCGGuACGU-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.