miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30709 5' -51.3 NC_006552.1 + 1205 0.7 0.734522
Target:  5'- --cCUgGCCGcCAAggGCCuggccgGCACACCg -3'
miRNA:   3'- caaGA-CGGC-GUUaaCGGua----CGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 2434 0.66 0.914292
Target:  5'- --gCUGCCGCGccUGCgA-GCgACGCCu -3'
miRNA:   3'- caaGACGGCGUuaACGgUaCG-UGUGG- -5'
30709 5' -51.3 NC_006552.1 + 2569 0.66 0.914292
Target:  5'- -gUCUGcCCGCA--UGCCA-GCguucgaccagcaGCACCc -3'
miRNA:   3'- caAGAC-GGCGUuaACGGUaCG------------UGUGG- -5'
30709 5' -51.3 NC_006552.1 + 7658 1.14 0.001289
Target:  5'- aGUUCUGCCGCAAUUGCCAUGCACACCg -3'
miRNA:   3'- -CAAGACGGCGUUAACGGUACGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 9837 0.68 0.826274
Target:  5'- gGUUCaGCCGCGAg-GCgGUGgaACACCu -3'
miRNA:   3'- -CAAGaCGGCGUUaaCGgUACg-UGUGG- -5'
30709 5' -51.3 NC_006552.1 + 10656 0.69 0.745318
Target:  5'- cUUC-GCCGCAAUcaUGCCG-GCGCaagGCCu -3'
miRNA:   3'- cAAGaCGGCGUUA--ACGGUaCGUG---UGG- -5'
30709 5' -51.3 NC_006552.1 + 12070 0.68 0.826274
Target:  5'- -cUCUGCUcuGCGA-UGCCGccgGCaACACCa -3'
miRNA:   3'- caAGACGG--CGUUaACGGUa--CG-UGUGG- -5'
30709 5' -51.3 NC_006552.1 + 13207 0.67 0.861081
Target:  5'- ----cGCCaGCAGcgagagcUUGCCGcgGCGCGCCa -3'
miRNA:   3'- caagaCGG-CGUU-------AACGGUa-CGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 19215 0.69 0.766534
Target:  5'- --aCUGCaUGUcacgaaGCCAUGCGCACCu -3'
miRNA:   3'- caaGACG-GCGuuaa--CGGUACGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 19485 0.66 0.898596
Target:  5'- ----aGCCGCAcgagugugaugGUUGCUGUGCucgacagaucgaucACACCg -3'
miRNA:   3'- caagaCGGCGU-----------UAACGGUACG--------------UGUGG- -5'
30709 5' -51.3 NC_006552.1 + 20596 0.74 0.511255
Target:  5'- -cUCguagGCgGCAAUgaacGCCAUGCGCGCg -3'
miRNA:   3'- caAGa---CGgCGUUAa---CGGUACGUGUGg -5'
30709 5' -51.3 NC_006552.1 + 22340 0.66 0.920637
Target:  5'- -aUCUGCUGCug--GCUGUGCAguUCc -3'
miRNA:   3'- caAGACGGCGuuaaCGGUACGUguGG- -5'
30709 5' -51.3 NC_006552.1 + 26740 0.72 0.611252
Target:  5'- uGUUCcuggaUGCCGCuggugGCCGUGCcuuuGCGCCc -3'
miRNA:   3'- -CAAG-----ACGGCGuuaa-CGGUACG----UGUGG- -5'
30709 5' -51.3 NC_006552.1 + 29671 0.67 0.861925
Target:  5'- -aUCgGCCGCGG-UGCCGUcuuccaGCACCu -3'
miRNA:   3'- caAGaCGGCGUUaACGGUAcg----UGUGG- -5'
30709 5' -51.3 NC_006552.1 + 32852 0.66 0.907655
Target:  5'- --cCUGCCGCGcacggcgGCUucGCGCACUg -3'
miRNA:   3'- caaGACGGCGUuaa----CGGuaCGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 36516 0.66 0.914292
Target:  5'- -aUCUGCgGCGGc-GCCAcGC-CGCCu -3'
miRNA:   3'- caAGACGgCGUUaaCGGUaCGuGUGG- -5'
30709 5' -51.3 NC_006552.1 + 37184 0.73 0.544008
Target:  5'- uGUUCUGCgGCGAguacgGCg--GCGCGCCg -3'
miRNA:   3'- -CAAGACGgCGUUaa---CGguaCGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 37583 0.66 0.920637
Target:  5'- ---aUGCC-CAGguaggUGCUgAUGCGCGCCg -3'
miRNA:   3'- caagACGGcGUUa----ACGG-UACGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 39393 0.67 0.853372
Target:  5'- --aCgGCCGguGaUGCCGgcgaGCACGCCc -3'
miRNA:   3'- caaGaCGGCguUaACGGUa---CGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 43564 0.66 0.893519
Target:  5'- uUUCccgGUCGCGAUucUGCCG-GC-CACCg -3'
miRNA:   3'- cAAGa--CGGCGUUA--ACGGUaCGuGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.