miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30709 5' -51.3 NC_006552.1 + 62812 0.66 0.914292
Target:  5'- -gUCUGCCucuaacagcaGCGAUaGCgAUGUGCAUCu -3'
miRNA:   3'- caAGACGG----------CGUUAaCGgUACGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 60388 0.72 0.577416
Target:  5'- --cCUGCgGCGGggGCgAUGCGCACg -3'
miRNA:   3'- caaGACGgCGUUaaCGgUACGUGUGg -5'
30709 5' -51.3 NC_006552.1 + 59927 0.72 0.615782
Target:  5'- --cCUGCCgGUAGUUGCCGgcgagcaagucgcgGCGCAUCg -3'
miRNA:   3'- caaGACGG-CGUUAACGGUa-------------CGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 57967 0.67 0.853372
Target:  5'- --gCUGCCGCGg--GCC-UGCGcCAUCa -3'
miRNA:   3'- caaGACGGCGUuaaCGGuACGU-GUGG- -5'
30709 5' -51.3 NC_006552.1 + 57093 0.71 0.667885
Target:  5'- gGUUCgUGgCGCGuuccgGCCAUGCAUcaGCCa -3'
miRNA:   3'- -CAAG-ACgGCGUuaa--CGGUACGUG--UGG- -5'
30709 5' -51.3 NC_006552.1 + 55929 0.72 0.599941
Target:  5'- -gUCUGCUGUAG-UGCCGUgGUAgACCa -3'
miRNA:   3'- caAGACGGCGUUaACGGUA-CGUgUGG- -5'
30709 5' -51.3 NC_006552.1 + 55809 0.66 0.907655
Target:  5'- --aCUGCCGCGcacGUcGCCccgugcgGCGCGCUu -3'
miRNA:   3'- caaGACGGCGU---UAaCGGua-----CGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 53075 0.69 0.772789
Target:  5'- uUUCUGCCGCAcgGUguccaggaacuugGCCuUGC-CGCCc -3'
miRNA:   3'- cAAGACGGCGU--UAa------------CGGuACGuGUGG- -5'
30709 5' -51.3 NC_006552.1 + 52577 0.68 0.826274
Target:  5'- -gUCgccgGCCGUAGUcUGCCcgGCGCugGCUa -3'
miRNA:   3'- caAGa---CGGCGUUA-ACGGuaCGUG--UGG- -5'
30709 5' -51.3 NC_006552.1 + 52355 0.75 0.438398
Target:  5'- cUUCUGCUGCGc-UGCCcgGCGgGCCu -3'
miRNA:   3'- cAAGACGGCGUuaACGGuaCGUgUGG- -5'
30709 5' -51.3 NC_006552.1 + 50944 0.66 0.914292
Target:  5'- --cCUGUCGUAGUUggcGCCGUaaccuCGCACCa -3'
miRNA:   3'- caaGACGGCGUUAA---CGGUAc----GUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 50875 0.69 0.755993
Target:  5'- -cUCgGCCuGUAAccucuUUGCCA-GCACGCCg -3'
miRNA:   3'- caAGaCGG-CGUU-----AACGGUaCGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 46720 0.73 0.555082
Target:  5'- ----cGCCGCAAgcGCCccacGCACGCCg -3'
miRNA:   3'- caagaCGGCGUUaaCGGua--CGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 45458 0.67 0.886028
Target:  5'- --gUUGgCGCug--GCCGcUGCGCGCCa -3'
miRNA:   3'- caaGACgGCGuuaaCGGU-ACGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 44676 0.66 0.90073
Target:  5'- aUUCgGCCGCcuucaGCCGgccuugcucGCGCACCa -3'
miRNA:   3'- cAAGaCGGCGuuaa-CGGUa--------CGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 44022 0.71 0.667885
Target:  5'- -aUCcgGCCGCGucggUGCCG-GCACAUCc -3'
miRNA:   3'- caAGa-CGGCGUua--ACGGUaCGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 43564 0.66 0.893519
Target:  5'- uUUCccgGUCGCGAUucUGCCG-GC-CACCg -3'
miRNA:   3'- cAAGa--CGGCGUUA--ACGGUaCGuGUGG- -5'
30709 5' -51.3 NC_006552.1 + 39393 0.67 0.853372
Target:  5'- --aCgGCCGguGaUGCCGgcgaGCACGCCc -3'
miRNA:   3'- caaGaCGGCguUaACGGUa---CGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 37583 0.66 0.920637
Target:  5'- ---aUGCC-CAGguaggUGCUgAUGCGCGCCg -3'
miRNA:   3'- caagACGGcGUUa----ACGG-UACGUGUGG- -5'
30709 5' -51.3 NC_006552.1 + 37184 0.73 0.544008
Target:  5'- uGUUCUGCgGCGAguacgGCg--GCGCGCCg -3'
miRNA:   3'- -CAAGACGgCGUUaa---CGguaCGUGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.