Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30709 | 5' | -51.3 | NC_006552.1 | + | 44022 | 0.71 | 0.667885 |
Target: 5'- -aUCcgGCCGCGucggUGCCG-GCACAUCc -3' miRNA: 3'- caAGa-CGGCGUua--ACGGUaCGUGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 44676 | 0.66 | 0.90073 |
Target: 5'- aUUCgGCCGCcuucaGCCGgccuugcucGCGCACCa -3' miRNA: 3'- cAAGaCGGCGuuaa-CGGUa--------CGUGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 45458 | 0.67 | 0.886028 |
Target: 5'- --gUUGgCGCug--GCCGcUGCGCGCCa -3' miRNA: 3'- caaGACgGCGuuaaCGGU-ACGUGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 46720 | 0.73 | 0.555082 |
Target: 5'- ----cGCCGCAAgcGCCccacGCACGCCg -3' miRNA: 3'- caagaCGGCGUUaaCGGua--CGUGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 50875 | 0.69 | 0.755993 |
Target: 5'- -cUCgGCCuGUAAccucuUUGCCA-GCACGCCg -3' miRNA: 3'- caAGaCGG-CGUU-----AACGGUaCGUGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 50944 | 0.66 | 0.914292 |
Target: 5'- --cCUGUCGUAGUUggcGCCGUaaccuCGCACCa -3' miRNA: 3'- caaGACGGCGUUAA---CGGUAc----GUGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 52355 | 0.75 | 0.438398 |
Target: 5'- cUUCUGCUGCGc-UGCCcgGCGgGCCu -3' miRNA: 3'- cAAGACGGCGUuaACGGuaCGUgUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 52577 | 0.68 | 0.826274 |
Target: 5'- -gUCgccgGCCGUAGUcUGCCcgGCGCugGCUa -3' miRNA: 3'- caAGa---CGGCGUUA-ACGGuaCGUG--UGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 53075 | 0.69 | 0.772789 |
Target: 5'- uUUCUGCCGCAcgGUguccaggaacuugGCCuUGC-CGCCc -3' miRNA: 3'- cAAGACGGCGU--UAa------------CGGuACGuGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 55809 | 0.66 | 0.907655 |
Target: 5'- --aCUGCCGCGcacGUcGCCccgugcgGCGCGCUu -3' miRNA: 3'- caaGACGGCGU---UAaCGGua-----CGUGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 55929 | 0.72 | 0.599941 |
Target: 5'- -gUCUGCUGUAG-UGCCGUgGUAgACCa -3' miRNA: 3'- caAGACGGCGUUaACGGUA-CGUgUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 57093 | 0.71 | 0.667885 |
Target: 5'- gGUUCgUGgCGCGuuccgGCCAUGCAUcaGCCa -3' miRNA: 3'- -CAAG-ACgGCGUuaa--CGGUACGUG--UGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 57967 | 0.67 | 0.853372 |
Target: 5'- --gCUGCCGCGg--GCC-UGCGcCAUCa -3' miRNA: 3'- caaGACGGCGUuaaCGGuACGU-GUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 59927 | 0.72 | 0.615782 |
Target: 5'- --cCUGCCgGUAGUUGCCGgcgagcaagucgcgGCGCAUCg -3' miRNA: 3'- caaGACGG-CGUUAACGGUa-------------CGUGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 60388 | 0.72 | 0.577416 |
Target: 5'- --cCUGCgGCGGggGCgAUGCGCACg -3' miRNA: 3'- caaGACGgCGUUaaCGgUACGUGUGg -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 62812 | 0.66 | 0.914292 |
Target: 5'- -gUCUGCCucuaacagcaGCGAUaGCgAUGUGCAUCu -3' miRNA: 3'- caAGACGG----------CGUUAaCGgUACGUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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