Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30709 | 5' | -51.3 | NC_006552.1 | + | 53075 | 0.69 | 0.772789 |
Target: 5'- uUUCUGCCGCAcgGUguccaggaacuugGCCuUGC-CGCCc -3' miRNA: 3'- cAAGACGGCGU--UAa------------CGGuACGuGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 19215 | 0.69 | 0.766534 |
Target: 5'- --aCUGCaUGUcacgaaGCCAUGCGCACCu -3' miRNA: 3'- caaGACG-GCGuuaa--CGGUACGUGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 50875 | 0.69 | 0.755993 |
Target: 5'- -cUCgGCCuGUAAccucuUUGCCA-GCACGCCg -3' miRNA: 3'- caAGaCGG-CGUU-----AACGGUaCGUGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 10656 | 0.69 | 0.745318 |
Target: 5'- cUUC-GCCGCAAUcaUGCCG-GCGCaagGCCu -3' miRNA: 3'- cAAGaCGGCGUUA--ACGGUaCGUG---UGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 1205 | 0.7 | 0.734522 |
Target: 5'- --cCUgGCCGcCAAggGCCuggccgGCACACCg -3' miRNA: 3'- caaGA-CGGC-GUUaaCGGua----CGUGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 44022 | 0.71 | 0.667885 |
Target: 5'- -aUCcgGCCGCGucggUGCCG-GCACAUCc -3' miRNA: 3'- caAGa-CGGCGUua--ACGGUaCGUGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 57093 | 0.71 | 0.667885 |
Target: 5'- gGUUCgUGgCGCGuuccgGCCAUGCAUcaGCCa -3' miRNA: 3'- -CAAG-ACgGCGUuaa--CGGUACGUG--UGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 59927 | 0.72 | 0.615782 |
Target: 5'- --cCUGCCgGUAGUUGCCGgcgagcaagucgcgGCGCAUCg -3' miRNA: 3'- caaGACGG-CGUUAACGGUa-------------CGUGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 26740 | 0.72 | 0.611252 |
Target: 5'- uGUUCcuggaUGCCGCuggugGCCGUGCcuuuGCGCCc -3' miRNA: 3'- -CAAG-----ACGGCGuuaa-CGGUACG----UGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 55929 | 0.72 | 0.599941 |
Target: 5'- -gUCUGCUGUAG-UGCCGUgGUAgACCa -3' miRNA: 3'- caAGACGGCGUUaACGGUA-CGUgUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 60388 | 0.72 | 0.577416 |
Target: 5'- --cCUGCgGCGGggGCgAUGCGCACg -3' miRNA: 3'- caaGACGgCGUUaaCGgUACGUGUGg -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 46720 | 0.73 | 0.555082 |
Target: 5'- ----cGCCGCAAgcGCCccacGCACGCCg -3' miRNA: 3'- caagaCGGCGUUaaCGGua--CGUGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 37184 | 0.73 | 0.544008 |
Target: 5'- uGUUCUGCgGCGAguacgGCg--GCGCGCCg -3' miRNA: 3'- -CAAGACGgCGUUaa---CGguaCGUGUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 20596 | 0.74 | 0.511255 |
Target: 5'- -cUCguagGCgGCAAUgaacGCCAUGCGCGCg -3' miRNA: 3'- caAGa---CGgCGUUAa---CGGUACGUGUGg -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 52355 | 0.75 | 0.438398 |
Target: 5'- cUUCUGCUGCGc-UGCCcgGCGgGCCu -3' miRNA: 3'- cAAGACGGCGUuaACGGuaCGUgUGG- -5' |
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30709 | 5' | -51.3 | NC_006552.1 | + | 7658 | 1.14 | 0.001289 |
Target: 5'- aGUUCUGCCGCAAUUGCCAUGCACACCg -3' miRNA: 3'- -CAAGACGGCGUUAACGGUACGUGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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